FC930656

Overview
NameFC930656
Unique NameFC930656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:13..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 47/168 (27.98%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  218 QKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSFLNM 721
            ++ VH  +  G  AD+++W+N++    +L   T +W LFE   Y F   V    +L ++  F W   + LFNR   ++P   +  E    +   +   +N  L + ++I  G   KQ             +G+  NFLT+LY+G V +  +P LYE+++D +D  L++
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSL 169          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 2
Query:  227 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSFLN 718
            VH  LG G  AD+LLWRN+  +  +L+ +T  W LFE   Y+ L+ V   L+L +   F W   + + NR    VP   +P E        +   +N  L +  DI+      +             +G+  N LT++YIG + + + P++YEK++D +D  +N
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVN 176          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-17
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  200 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEV 703
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR    +P F +   +       +  +VN+ L +  DI+     +              IGS  +F T+ +   +   T+P  YE++ED +
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  215 RQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFW--VNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEV 703
            R++ ++H LGGG+ AD++ W+NKK S ++L   T IW LFE + Y F+T +C  L+L +     W  +  S L    P  +        +  +    +   +N  +  L DIS G   +              +G+  + LT+LYI FV   T+P+LYE++E+E+
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDL----RISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 47/163 (28.83%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  227 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSFL 715
            V  +LG G  AD+ LW++K  S   L+ AT  W L E++    + ++C  L+L ML  F W     +F       P  +  P+   +    + + +   L +L +I+ G   K              IGS  + LT+LYI  V + T+PV+Y + ++ +DSF+
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPD---SPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFM 163          
The following BLAST results are available for this feature:
BLAST of FC930656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLJ_ARATH2.150e-1827.98Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH3.667e-1829.88Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH1.820e-1727.38Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH1.541e-1630.91Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH1.350e-1228.83Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34009H04EF PostHarvC1 Citrus clementina cDNA clone C34009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930656 ID=FC930656; Name=FC930656; organism=Citrus clementina; type=EST; length=759bp
GACGGACACAACTCCAATCATCTACTCAACAGACCCCATTTTTTTCCTTT
TTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAGAACATT
TCGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAGCAGAAAGC
TGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGCTCGTTTCA
ATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGCGGTGGA
AAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGCCAGTGT
ATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTAACTACC
ATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTTGCTCAA
TTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCACCATCAAAAGT
TCCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCACGACAG
TTTGTGCTAATGTTAACGAAGCTCTGGGGCTACTTCAGGACATTTCATGT
GGAGGAAAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTGGGCTGC
TGCTGTGATAGGGAGCTGTTGTAACTTTTTGACCGTTCTATATATTGGTT
TTGTTGCTGCCCATACATTGCCAGTCCTGTATGAGAAGCATGAAGATGAA
GTTGACAGCTTTCTGAACATGTCTTCCAGCAGCTCCAGATCAGTACAAGA
GCTTGATTC
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