FC930657

Overview
NameFC930657
Unique NameFC930657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  463 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            LFEAL   ++EEM R+  V ++GED+GHYGGSYKVT+ L  KYG+ RV+DTPIAENSF G  IGAAMTGL  +VEGM
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E+ + +AL   ++EEM  DP V VMGE+VG Y G+YK+TKGL +KYG  RV DTPI E  FTG+G+GAA  GL+P+VE M
Sbjct:   35 EMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFM 114          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E+ + +A+   L+EE+ RD  V +MGE+V  Y G+YK+TKGL DKYG  R++DTPI E  F G+G+GAAM G RPI+E M
Sbjct:   28 EVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFM 107          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  463 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            L EALR+ + EEM RD  V VMGE+V  Y G+YKVT+GL  ++G  RV+DTPI+E  F+G+G+GAAM GLRP++E M
Sbjct:  141 LREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFM 217          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            +L + EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M
Sbjct:   32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 111          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            +L + EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M
Sbjct:   32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 111          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            ++ + +AL   L+ EM  D  V +MGE+VG Y G+YKVTKGL +KYG  RVLDTPI E  FTG+G+GAA  GL+P+VE M
Sbjct:   25 QMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 104          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  469 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M
Sbjct:   37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 111          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  469 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            EAL   + EE+DRD  V ++GE+V  Y G+YKV+KGL D++G+ RV+DTPI E  FTG+ +GAA+ GL+PIVE M
Sbjct:   43 EALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFM 117          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            ++ + EALR+ ++EEM RD  V VMGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFM 81          
The following BLAST results are available for this feature:
BLAST of FC930657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_MESVI1.235e-2266.23Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH1.972e-2057.50Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI2.848e-1953.75Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO4.858e-1958.44Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RAT4.858e-1952.50Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE4.858e-1952.50Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA1.082e-1856.25Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN1.082e-1854.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST1.413e-1856.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE1.413e-1855.00Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34009H05EF PostHarvC1 Citrus clementina cDNA clone C34009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930657 ID=FC930657; Name=FC930657; organism=Citrus clementina; type=EST; length=693bp
AGTGGCTTCAATTAAATCGCCGAAAACGAGAGCAACGTAAAGCAGCTCAT
AAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTCCAATATA
AATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTTTCAGTTA
ATAAGAAAAACCTCTCGCAGTTCGTCAAATCGAATCGAATCGAATCCAAT
GGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCACCGTCCA
ATTGCTTCGATTCTAAGAAGTTCCAGCTCTCAACTCGCAGATCTCTCTCA
GGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCGTCAACTT
AGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACTAATGCAG
TTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAAGCAAGGG
CACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAGAAAT
GGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCACTATG
GGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGATCTC
AGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTATGGGCAT
TGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
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