FC930657

Overview
NameFC930657
Unique NameFC930657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  469 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            +AL   L+EE+ RD  V ++GE+V  Y G+YK++KGL  KYGD R+ DTPI E +  G+ +GAAM GLRPI E M
Sbjct:   38 DALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFM 112          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            + + +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAE 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            + + +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAE 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  469 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            EAL   ++  ++RD +V + G+D G  GG ++ TKGL  KYG  RV D PIAENS  G+G+GAA+ GL+PIVE
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVE 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            + L EA+ + +++ M++D  + V GED G  GG ++VT GL  KYG+ RV DTPIAE++  G  +G A+ GL+PI E
Sbjct:    4 ITLLEAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAE 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  469 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            EAL   ++  ++RDP+V + G+D G  GG ++ TKGL  KYG+ RV D PIAE +  G+G+GAA+ GL+PIVE
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVE 83          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            L + +AL  GL + +  DP V ++GEDVG  GG ++VT+GL  ++G  RV+DTP+AE    G  IG AM G RP+VE
Sbjct:   17 LPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVE 93          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            + + +ALR  ++  ++RD +V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE
Sbjct:    6 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE 82          
The following BLAST results are available for this feature:
BLAST of FC930657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_ASCSU2.947e-1653.33Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_THET83.259e-1549.352-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET23.259e-1549.352-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_MYCGE4.256e-1552.05Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA4.256e-1545.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN1.238e-1450.68Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES2.758e-1443.59Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ2.758e-1443.59Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX4.705e-1448.05Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEPU1.048e-1342.862-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009H05EF PostHarvC1 Citrus clementina cDNA clone C34009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930657 ID=FC930657; Name=FC930657; organism=Citrus clementina; type=EST; length=693bp
AGTGGCTTCAATTAAATCGCCGAAAACGAGAGCAACGTAAAGCAGCTCAT
AAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTCCAATATA
AATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTTTCAGTTA
ATAAGAAAAACCTCTCGCAGTTCGTCAAATCGAATCGAATCGAATCCAAT
GGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCACCGTCCA
ATTGCTTCGATTCTAAGAAGTTCCAGCTCTCAACTCGCAGATCTCTCTCA
GGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCGTCAACTT
AGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACTAATGCAG
TTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAAGCAAGGG
CACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAGAAAT
GGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCACTATG
GGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGATCTC
AGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTATGGGCAT
TGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
back to top