FC930657

Overview
NameFC930657
Unique NameFC930657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            + + +ALR  ++  ++RD  V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE
Sbjct:   17 MTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVE 93          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L  E+  DP+V + GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ IG A+ G RP+ E
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPE 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVME 80          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            ++ + +A+ + L  E+  D +V V GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ +G  + G RP++E
Sbjct:    3 QMTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVME 80          
The following BLAST results are available for this feature:
BLAST of FC930657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODBB_PSEAE2.335e-1342.862-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_BACST6.794e-1341.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC1.159e-1239.74Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU2.582e-1238.46Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34009H05EF PostHarvC1 Citrus clementina cDNA clone C34009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930657 ID=FC930657; Name=FC930657; organism=Citrus clementina; type=EST; length=693bp
AGTGGCTTCAATTAAATCGCCGAAAACGAGAGCAACGTAAAGCAGCTCAT
AAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTCCAATATA
AATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTTTCAGTTA
ATAAGAAAAACCTCTCGCAGTTCGTCAAATCGAATCGAATCGAATCCAAT
GGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCACCGTCCA
ATTGCTTCGATTCTAAGAAGTTCCAGCTCTCAACTCGCAGATCTCTCTCA
GGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCGTCAACTT
AGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACTAATGCAG
TTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAAGCAAGGG
CACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAGAAAT
GGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCACTATG
GGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGATCTC
AGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTATGGGCAT
TGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
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