FC930657

Overview
NameFC930657
Unique NameFC930657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930657_ssr178 microsatellite FC930657_ssr178:178..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15198 contig Ccv1_Contig15198:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  472 ALREGLEEEMDRDPHVCVMGEDV----------GHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            A+ E +++EM RDP V ++GED+            +GG   VTKGL  K+GD R+LDTP++E+++ G  IGAA  G+RPI E M
Sbjct:   10 AINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHGD-RLLDTPLSESAYVGAAIGAAACGMRPIAELM 92          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  445 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            Q  ++ LF+A+   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E
Sbjct:   67 QTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE 146          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  463 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            LF+A+  G++  M +D    V GEDVG +GG ++ T GL DKYG  RV +TP+ E    G  IG A  G  PI E
Sbjct:   51 LFQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAE 124          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  445 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E
Sbjct:   65 QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE 144          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  445 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E
Sbjct:   65 QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE 144          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  445 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 687
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E
Sbjct:   67 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE 146          
The following BLAST results are available for this feature:
BLAST of FC930657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ACOB_RALEH5.752e-1245.24Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODBB_BOVIN1.674e-1141.982-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_DICDI2.186e-1145.332-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT2.855e-1140.742-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE2.855e-1140.742-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN3.728e-1140.742-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC34009H05EF PostHarvC1 Citrus clementina cDNA clone C34009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930657 ID=FC930657; Name=FC930657; organism=Citrus clementina; type=EST; length=693bp
AGTGGCTTCAATTAAATCGCCGAAAACGAGAGCAACGTAAAGCAGCTCAT
AAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTCCAATATA
AATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTTTCAGTTA
ATAAGAAAAACCTCTCGCAGTTCGTCAAATCGAATCGAATCGAATCCAAT
GGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCACCGTCCA
ATTGCTTCGATTCTAAGAAGTTCCAGCTCTCAACTCGCAGATCTCTCTCA
GGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCGTCAACTT
AGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACTAATGCAG
TTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAAGCAAGGG
CACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAGAAAT
GGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCACTATG
GGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGATCTC
AGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTATGGGCAT
TGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
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