FC930658

Overview
NameFC930658
Unique NameFC930658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.169e-83
Identity = 141/189 (74.60%), Postives = 152/189 (80.42%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEK+IAEY+WIGGSGMDLRSKARTL  P +DP KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR NAAK+F HP+V+AEE WYGIEQEYTLLQ  + WP+                   ADKA GRDIV+SHYKACLYAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHNAAKIFSHPEVLAEETWYGIEQEYTLLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 30.0314 bits (66), Expect = 1.169e-83
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP VGIS+GD+LW+
Sbjct:  202 VGPAVGISAGDELWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.784e-83
Identity = 146/206 (70.87%), Postives = 162/206 (78.64%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            TEK+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAG  ISGINGEVMPGQWEFQ  P         VWV+  ++
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYIL 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.330e-83
Identity = 150/206 (72.82%), Postives = 161/206 (78.16%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F +PDVVAEEPWYGIEQEYTLLQ+DINWPL                   ADKA GRDIV+SHYKA LYAG  ISGINGEVMPGQWEFQ  P         VWV+  ++
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYIL 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.330e-83
Identity = 147/206 (71.36%), Postives = 161/206 (78.16%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR+GNNILVMCD YTPAGEPIPTNKR NAAK+F  P+V +EEPWYGIEQEYTLLQKDINWPL                   ADK+ GRDIV+SHYKACLYAG  ISGINGEVMPGQWEFQ  P         VWV+  ++
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYIL 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.975e-83
Identity = 146/206 (70.87%), Postives = 161/206 (78.16%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR+NAAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAG  ISGINGEVMPGQWEFQ  P         VWV+  ++
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYIL 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 5.757e-83
Identity = 140/189 (74.07%), Postives = 153/189 (80.95%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEK+IAEY+W+GGSG+DLRSKARTL  P  DP+KLPKWNYDGSST QAPG DSEVIL+PQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR  AAK+F HPDVVAEEPW+GIEQEYTLLQKDI+WP+                   A+KA GRDIV+SHYKACLYAG  ISGIN EVMPGQWEFQ  P
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHAAAKIFSHPDVVAEEPWFGIEQEYTLLQKDIHWPIGWPLGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGP 204          

HSP 2 Score: 29.6462 bits (65), Expect = 5.757e-83
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP VGIS+GD+LW+
Sbjct:  202 VGPSVGISAGDELWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 9.795e-83
Identity = 140/189 (74.07%), Postives = 155/189 (82.01%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +EK+IAEY+W+GGSGMD+RSKARTLP P TDP+KLPKWNYDGSST QAPG DSEVILYPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AA++F +PDV+AE PWYGIEQEYTLLQKD+NWPL                   ADK+ GRDIV++HYKA LYAG  ISGINGEVMPGQWEFQ  P
Sbjct:   16 SEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGP 204          

HSP 2 Score: 26.5646 bits (57), Expect = 9.795e-83
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGP VGIS+ D++W+
Sbjct:  202 VGPSVGISAADEIWI 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 3.365e-82
Identity = 145/206 (70.39%), Postives = 160/206 (77.67%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            TEK+IAEY+WIGGSG+DLR KARTLP P TDP++LPKWNYDGSST QAPG DSEVILYPQ +FKDPFRRGN+ILVMCDAY+PAGEPIPTNKR  AAKVF HPDVVAEE WYGIEQEYTLLQKDINWPL                   ADKA GRD+V +HYKACL+AG  ISGINGEVMPGQWEFQ  P         +WV+  ++
Sbjct:   15 TEKIIAEYIWIGGSGLDLRCKARTLPGPVTDPSELPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVFSHPDVVAEETWYGIEQEYTLLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYIL 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 5.740e-82
Identity = 142/206 (68.93%), Postives = 161/206 (78.16%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            T+K+IAEY+W+GGSGMD+RSKARTLP P TDP++LPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAKVF +PDV AE PWYGIEQEYTLLQKD+ WP+                   ADK+ GRD+V+SHYKACLYAG  ISGINGEVMPGQWEFQ  P         +WV+  ++
Sbjct:   16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYIL 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.279e-81
Identity = 142/206 (68.93%), Postives = 163/206 (79.13%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            T+K+IAEY+WIGGSG+D+RSKARTLP P +DP++LPKWNYDGSST QAPG+DSEVILYPQ +F+DPFRRG+NILV+CDAYTPAGEPIPTNKR  AAKVF HPDVVAE PWYGIEQEYTLLQK++NWP+                   ADKA GRDIV++HYKACLYAG  ISGINGEVMPGQWEFQ  P         VWV+  ++
Sbjct:   16 TDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKEVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYIL 221          
The following BLAST results are available for this feature:
BLAST of FC930658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_VITVI1.169e-8374.60Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA4_MAIZE1.784e-8370.87Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA_NICPL2.330e-8372.82Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLN11_ORYSJ2.330e-8371.36Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA3_MAIZE3.975e-8370.87Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA_LUPLU5.757e-8374.07Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLN12_ARATH9.795e-8374.07Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_PEA3.365e-8270.39Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLN11_ARATH5.740e-8268.93Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_LOTJA1.279e-8168.93Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]

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Properties
Property NameValue
Genbank descriptionC34009H06EF PostHarvC1 Citrus clementina cDNA clone C34009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930658 ID=FC930658; Name=FC930658; organism=Citrus clementina; type=EST; length=732bp
GGTCTCTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGTTTT
CGTTTCAAACAAACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAAC
GATCTCCTCAACCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGA
ATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAA
CTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGGAATTAC
GATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTT
GTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCC
TGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAAC
AAAAGATTCAATGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGA
AGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACA
TAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGA
CCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAAATTACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAGTGGGTCCCTGTG
TGGGTATCTCTTCTGGTGATCAGTTATGGATG
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