FC930658

Overview
NameFC930658
Unique NameFC930658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 1.066e-72
Identity = 122/189 (64.55%), Postives = 147/189 (77.78%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            T+ +IAEY+WIGG+G+D+RSK+RT+  P + P+++PKWNYDGSST QAPG+DSEVILYPQ +FKDPFR GNNILV+CDAYTPAGEPIPTNKR  AA++F +P V AE PWYGIEQEYTLLQ ++ WPL                   ADK+ GRDI ++HYKAC+YAG  ISG NGEVMPGQWE+Q  P
Sbjct:   74 TDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIFSNPKVEAEIPWYGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGP 262          

HSP 2 Score: 26.1794 bits (56), Expect = 1.066e-72
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGI +GD +W
Sbjct:  260 VGPSVGIEAGDHIW 273          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.084e-72
Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            T+++IAEY+WIGGSG+DLRSK+RTL  P  DP++LPKWNYDGSST QAPG+DSEVILYPQ +F+DPFR GNNILV+CD YTPAGEPIPTNKR  AA++F +  V  E PW+GIEQEYTLLQ ++NWPL                   A+K+ GRDI ++HYKACLYAG  ISG NGEVMPGQWEFQ  P
Sbjct:   72 TDRIIAEYIWIGGSGIDLRSKSRTLEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGEPIPTNKRARAAEIFSNKKVNEEIPWFGIEQEYTLLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGP 260          

HSP 2 Score: 25.7942 bits (55), Expect = 3.084e-72
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGI +GD +W
Sbjct:  258 VGPSVGIEAGDHVW 271          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.389e-71
Identity = 121/189 (64.02%), Postives = 145/189 (76.72%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            ++++IAEY+WIGGSG+DLRSK+RT+  P  DP++LPKWNYDGSST QAPG+DSEVILYPQ +F+DPFR GNNILV+CD +TPAGEPIPTNKR  AA++F +  V  E PW+GIEQEYTLLQ+++ WPL                   ADK  GRDI ++HYKACLYAG  ISG NGEVMPGQWEFQ  P
Sbjct:   74 SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGP 262          

HSP 2 Score: 25.7942 bits (55), Expect = 4.389e-71
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGI +GD +W
Sbjct:  260 VGPSVGIDAGDHVW 273          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 6.254e-70
Identity = 124/189 (65.61%), Postives = 141/189 (74.60%), Query Frame = 2
Query:  131 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            TEKVIAEY+WIGGSGMD+RSKAR+L  P +   +LPKWNYDGSST QA G DSEVILYPQ +F+DPFRRG +ILV+CDAY+P G  IP+NKR  AAK+F    V  EE WYG+EQEYTLLQKD+ WPL                   ADKA GRDIV++HYKACLY+G  ISGINGEVMPGQWEFQ  P
Sbjct:   17 TEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGP 205          

HSP 2 Score: 26.9498 bits (58), Expect = 6.254e-70
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  688 VGPCVGISSGDQLW 729
            VGP VGIS+ D+LW
Sbjct:  203 VGPSVGISAADELW 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.197e-53
Identity = 104/197 (52.79%), Postives = 120/197 (60.91%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTP----------AGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            K+ AEYVWIGGS  D+RSK+RTL    T P  LP WNYDGSST QAPG DSEV L P+++FKDPFR G+NILVMCD Y P          A +PIPTN RF  A+V        EEPW+GIEQEYTLL     WPL                   A  A+GRD+   HY+ CL AG  ISG+N EV+P QWE+Q  P
Sbjct:   37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVM--EKAKKEEPWFGIEQEYTLLNAITKWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGP 231          

HSP 2 Score: 29.261 bits (64), Expect = 3.197e-53
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI+ GD +WM
Sbjct:  229 VGPCEGITMGDHMWM 243          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 9.864e-49
Identity = 98/186 (52.69%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            V A YVWI G+G DLR K RTL      P +LP WNYDGSS  QA G +S+  LYP  ++KDPFRRGNNILVMCD Y   G P  TNKR    +V       AEEPW+GIEQEYT L  D   PL                   A+K   RDIV++HY+ACLYAG  +SG N EVMP QWEFQ  P
Sbjct:   32 VQATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEVAN--KCAAEEPWFGIEQEYTFLDFD-GHPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGP 214          

HSP 2 Score: 30.8018 bits (68), Expect = 9.864e-49
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS GD LWM
Sbjct:  212 VGPCEGISIGDDLWM 226          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.692e-46
Identity = 96/191 (50.26%), Postives = 115/191 (60.21%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLLQKDIN---WPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            KVIAEYVW+ G+G +LRSKARTL    T   +LP+WN+DGSSTNQAPG DS++ L P   + DPFRRG+NI V+ + +   G P   N R  A K+F  H D   EE W+GIEQEYTL     N   WP                    A K   RD++ +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   23 KVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLFQAHKD---EEIWFGIEQEYTLFDMYDNVYAWP----KGGYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGP 205          

HSP 2 Score: 33.113 bits (74), Expect = 5.692e-46
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS GDQLWM
Sbjct:  203 VGPCEGISMGDQLWM 217          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.642e-45
Identity = 95/191 (49.74%), Postives = 117/191 (61.26%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTL--LQKDI-NWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            ++IAEYVWI G+G +LRSK RTL    T   +LP+WN+DGSSTNQAPG DS++ L P   + DPFRRG+NI+V+   Y   G P   N R  AAK+F  H D   EE W+G+EQEYTL  +  D+  WP                    A K   RD++ +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   23 RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKD---EEIWFGLEQEYTLFDMYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGP 205          

HSP 2 Score: 32.3426 bits (72), Expect = 1.642e-45
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GDQLWM
Sbjct:  203 VGPCTGIDMGDQLWM 217          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.739e-45
Identity = 91/188 (48.40%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +K+ AEYVWI G G  LR K  T+    TD  +L  W++DGSSTNQAPG DS+V L P  +FKDPFR G+NILV+ + Y   G P  TN R +A KVF   +    EPW+G+EQEYTL   D + P                      K   RD++ +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   20 DKIQAEYVWIDGDG-GLRCKTTTVSKKVTDIGQLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVF--DEAKEHEPWFGLEQEYTLFDAD-DQPYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGP 203          

HSP 2 Score: 31.187 bits (69), Expect = 4.739e-45
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS GD LWM
Sbjct:  201 VGPCEGISMGDHLWM 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.694e-44
Identity = 91/189 (48.15%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEE-PWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +KV AEYVWI G G  LRSK  T+   TTD  +L  W++DGSSTNQAPG DS+V L P  +FKDPFR G+NILV+ + +   G P  TN R +  KV    D+  +  PW+G+EQEYTL   D   P                      K   RD++ +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   20 DKVQAEYVWIDGDG-GLRSKTMTMTKKTTDIGQLRIWDFDGSSTNQAPGGDSDVYLRPAAIFKDPFRGGDNILVLAETFNNDGTPNRTNHRHHTKKVM---DLAKDSVPWFGLEQEYTLFDAD-GTPFGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGP 203          

HSP 2 Score: 31.187 bits (69), Expect = 6.694e-44
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS GD LWM
Sbjct:  201 VGPCEGISMGDHLWM 215          
The following BLAST results are available for this feature:
BLAST of FC930658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_PEA1.066e-7264.55Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA3.084e-7265.61Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_ARATH4.389e-7164.02Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA_PINSY6.254e-7065.61Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_CHLRE3.197e-5352.79Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA2_DROME9.864e-4952.69Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_CANGA5.692e-4650.26Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_YEAST1.642e-4549.74Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_AGABI4.739e-4548.40Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_SUIBO6.694e-4448.15Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]

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Properties
Property NameValue
Genbank descriptionC34009H06EF PostHarvC1 Citrus clementina cDNA clone C34009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930658 ID=FC930658; Name=FC930658; organism=Citrus clementina; type=EST; length=732bp
GGTCTCTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGTTTT
CGTTTCAAACAAACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAAC
GATCTCCTCAACCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGA
ATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAA
CTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGGAATTAC
GATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTT
GTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCC
TGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAAC
AAAAGATTCAATGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGA
AGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACA
TAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGA
CCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAAATTACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAGTGGGTCCCTGTG
TGGGTATCTCTTCTGGTGATCAGTTATGGATG
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