FC930658

Overview
NameFC930658
Unique NameFC930658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.723e-44
Identity = 89/188 (47.34%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +K+ AEYVW+ G G  LRSK  T+    TD   L  W++DGSSTNQAPG DS+V L P  +FKDPFR G+NILV+ + Y   G P  TN R +AAKV        + PW+G+EQEYTL   D   P                      K   RD++ +HY+ACLY+G  ISGIN EVMP QWEFQ  P
Sbjct:   20 DKIQAEYVWVDGDG-GLRSKTTTVSKKVTDIGSLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKVM--EQAKEDVPWFGLEQEYTLFDAD-GSPYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGP 203          

HSP 2 Score: 31.187 bits (69), Expect = 8.723e-44
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS GD LWM
Sbjct:  201 VGPCEGISMGDHLWM 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.271e-43
Identity = 90/188 (47.87%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAE-EPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +++AEYVW+  +G + RSK+RTLP        LP WN+DGSSTNQAPGD+S+V L P  V+ DPFR   NI+V+ + +   G P   N R +  KV    D  AE EPW+G+EQEYTLL  D N P                      K + RDIV +HYKACLYAG  ISG N EVMP QWE+Q  P
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVM---DTYAEDEPWFGLEQEYTLLGPD-NRPYGWPTGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGP 207          

HSP 2 Score: 31.187 bits (69), Expect = 4.271e-43
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC+GI  GDQLW+
Sbjct:  205 VGPCLGIEMGDQLWV 219          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.251e-43
Identity = 85/188 (45.21%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +K  A Y+W+ G+G +LRSK RTL      P++LP WN+DGSST QA   +S+V LYP  V++DPFR GNN LV+C+ Y    +P  TN+R+   +V        + PW+G+EQEYTLL  D   PL                   A++  GRD+V +HY+ACL AG  ISG N +VMP QWEFQ  P
Sbjct:   21 QKCQAMYIWVDGTGENLRSKTRTLNFTPKSPSELPIWNFDGSSTGQAERSNSDVYLYPVAVYRDPFRLGNNKLVLCETYKYNKKPADTNQRWKCMEVMTR--AADQHPWFGMEQEYTLLDID-KHPLGWPKNGYPGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGP 205          

HSP 2 Score: 30.0314 bits (66), Expect = 7.251e-43
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI+ GD LWM
Sbjct:  203 VGPCEGITMGDDLWM 217          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.232e-42
Identity = 90/188 (47.87%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEE-PWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            K  AEYVWI G G  LRSK  T+    TD ++L  W++DGSSTNQAP  +S+V L P  +FKDPFR G NILV+ + Y   G P  TN R + AKV    ++  +E PW+GIEQEYTL   D   P                      K   RD++ +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   21 KFHAEYVWIDGDG-GLRSKTTTVDQKVTDISQLRVWDFDGSSTNQAPSGNSDVYLRPSAIFKDPFRGGENILVLSETYNNDGTPNRTNHRHHTAKVM---ELAKDEIPWFGIEQEYTLFDAD-GSPYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGP 203          

HSP 2 Score: 31.187 bits (69), Expect = 1.232e-42
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS GD LWM
Sbjct:  201 VGPCEGISMGDHLWM 215          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.725e-42
Identity = 89/191 (46.60%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAE-EPWYGIEQEYTLLQKD---INWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +V AEY+WI   G  +RSK  TL    +    L +WN+DGSSTNQAP D+S+V L P  +FKDPFR G NILV+C+ Y   G P  +N R +  KV    D   + EPW+G+EQEYTL   D     WP                    A K   RD + +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   24 RVQAEYIWIDAEG-GIRSKTMTLDKAPSSVADLKEWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYRAHCKKVM---DAAKDTEPWFGLEQEYTLFDADGQVFGWP----KNGFPGPQGPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGP 206          

HSP 2 Score: 30.4166 bits (67), Expect = 2.725e-42
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GD LWM
Sbjct:  204 VGPCTGIEMGDHLWM 218          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.624e-42
Identity = 90/190 (47.37%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLL---QKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +IAEYVWI   G  LRSK RTL    T    LP+WN+DGSST QAPG DS++ L P   + DPFRRG+NI+V+ + +   G P   N R  AAK+F  H D    E W+G+EQEYTL     +   WP                    A K   RD++ +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   26 IIAEYVWIDSEG-GLRSKGRTLNKKVTSVDSLPEWNFDGSSTGQAPGHDSDIYLKPVAFYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLFEAHKDA---EMWFGLEQEYTLFDQYDQVYGWP----KGGFPAPQGPYYCGVGAGKVFARDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGP 207          

HSP 2 Score: 28.1054 bits (61), Expect = 4.624e-42
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI+  DQLW+
Sbjct:  205 VGPCEGIAMADQLWI 219          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.624e-42
Identity = 90/190 (47.37%), Postives = 111/190 (58.42%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLLQKDIN---WPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            VIAEY+W+  +G  LRSK RTL        +LP+WN+DGSST QAPG DS+V L P   + DPFRRG+NI+V+ + +   G P   N R  AAK+F  H    A + W+G+EQEYTL   + N   WP                    A K   RD+V +HY+ACLYAG  ISGIN EVMP QWEFQ  P
Sbjct:   23 VIAEYIWVDSAG-HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPGHDSDVYLKPVAFYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLFEAHR---AADIWFGLEQEYTLFDHNDNVYGWP----KGGFPAPQGPYYCGVGAGKVYARDVVEAHYRACLYAGLRISGINAEVMPSQWEFQVGP 204          

HSP 2 Score: 30.0314 bits (66), Expect = 4.624e-42
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI+ GD+LW+
Sbjct:  202 VGPCTGITMGDELWV 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.027e-42
Identity = 89/187 (47.59%), Postives = 107/187 (57.22%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            ++AEY+WI   G + RSK+RTL      P  LP WN+DGSST QAPGD+S+V L P  VF DPFR   NILV+ + +   G P   N R   AK+   H    A EPW+G+EQEYTLL    N P                      K + RDIV++HYKACLY+G  ISG N EVMP QWEFQ  P
Sbjct:   26 IMAEYIWIDADG-ETRSKSRTLKEKEYTPEDLPMWNFDGSSTGQAPGDNSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKYNYRHECAKLMEAH---AAHEPWFGLEQEYTLLDLS-NRPFGWPANGFPAPQGPYYCGVGTGKVVQRDIVDAHYKACLYSGVKISGTNAEVMPAQWEFQVGP 207          

HSP 2 Score: 30.8018 bits (68), Expect = 6.027e-42
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPCVGI  GD LW+
Sbjct:  205 VGPCVGIEMGDHLWL 219          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.858e-42
Identity = 87/186 (46.77%), Postives = 110/186 (59.14%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            V+AEY+WI   G   RSK +TL    +   +LP+WN+DGSST QAPGD+S+V L P  ++ DPFRRG+NILV+C+ +   G P   N R + A++        EE W+G+EQEYTLL  D  WP                      K   RDIV +HY+ACLYAG  ISGIN EVMP QWE+Q  P
Sbjct:   12 VMAEYIWIDAHG-GTRSKTKTLSKAPSSVDELPEWNFDGSSTAQAPGDNSDVYLRPVAMYPDPFRRGDNILVLCETWDSDGSPNKFNYRHDCARLM--ETHAKEEFWFGLEQEYTLLGPD-GWPYGWPKGGFPGAQGPYYCGVGTGKVYCRDIVEAHYRACLYAGVKISGINAEVMPSQWEYQVGP 193          

HSP 2 Score: 27.7202 bits (60), Expect = 7.858e-42
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GD LW+
Sbjct:  191 VGPCHGIEMGDHLWI 205          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.738e-41
Identity = 89/187 (47.59%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            ++AEYVW+   G   RSK+RTLP     P  LP WN+DGSSTNQAPGD+S+V L P  V+ DPFR   NI+V+ + +   G P   N R +  KV    D  A +EP +G+EQEYTLL  D N P                      K + RDIV +HYKACLYAG  ISG N EVMP QWE+Q  P
Sbjct:   24 IMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVM---DTYADDEPLFGLEQEYTLLGSD-NRPYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGP 205          

HSP 2 Score: 31.187 bits (69), Expect = 1.738e-41
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI+ GDQLW+
Sbjct:  203 VGPCTGIAMGDQLWI 217          
The following BLAST results are available for this feature:
BLAST of FC930658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_HEBCY8.723e-4447.34Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_FUSSH4.271e-4347.87Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_PANAR7.251e-4345.21Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_AMAMU1.232e-4247.87Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_CRYNE2.725e-4246.60Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_KLULA4.624e-4247.37Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO4.624e-4247.37Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_COLGL6.027e-4247.59Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_EMENI7.858e-4246.77Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_GIBFU1.738e-4147.59Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]

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Properties
Property NameValue
Genbank descriptionC34009H06EF PostHarvC1 Citrus clementina cDNA clone C34009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930658 ID=FC930658; Name=FC930658; organism=Citrus clementina; type=EST; length=732bp
GGTCTCTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGTTTT
CGTTTCAAACAAACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAAC
GATCTCCTCAACCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGA
ATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAA
CTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGGAATTAC
GATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTT
GTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCC
TGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAAC
AAAAGATTCAATGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGA
AGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACA
TAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGA
CCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAAATTACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAGTGGGTCCCTGTG
TGGGTATCTCTTCTGGTGATCAGTTATGGATG
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