FC930658

Overview
NameFC930658
Unique NameFC930658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.950e-41
Identity = 89/191 (46.60%), Postives = 110/191 (57.59%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLL---QKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            KV+AEY+WI G    LRSK  TL A  +   +L  WN+DGSST QAPG++S+ +L P  ++ DPFRRG+NILV+   YT  G P   N R   AK+   H D   +E W+GIEQEYT+L    +   WP                      +   RDIV +HYKACLYAG  ISGIN EVMP QWE+Q  P
Sbjct:   27 KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD---KETWFGIEQEYTMLDYYDRPFGWP----KGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGP 209          

HSP 2 Score: 32.3426 bits (72), Expect = 2.950e-41
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GDQLWM
Sbjct:  207 VGPCAGIEMGDQLWM 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 5.006e-41
Identity = 85/189 (44.97%), Postives = 112/189 (59.26%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+WI G+G  LR K RTL +      +LP+WN+DGSST Q+ G +S++ L P  +F+DPFR+  N LV C+ +    +P  TN R    ++    D+V+ + PW+G+EQEYTL+  D   P                    ADKA GRDIV +HY+ACLYAG  I+G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 27.7202 bits (60), Expect = 5.006e-41
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIDMGDHLWV 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 159.844 bits (403), Expect = 5.006e-41
Identity = 84/189 (44.44%), Postives = 112/189 (59.26%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+WI G+G  LR K RTL +      +LP+WN+DGSST Q+ G +S++ L P  +F+DPFR+  N LV+C+ +     P  TN R    ++    D+V+ + PW+G+EQEYTL+  D   P                    AD+A GRDIV +HY+ACLYAG  I+G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 29.261 bits (64), Expect = 5.006e-41
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GIS GD LW+
Sbjct:  206 IGPCEGISMGDHLWV 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.526e-41
Identity = 84/187 (44.92%), Postives = 109/187 (58.29%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            ++AEY+WI G+   +RSK +TL    +    LP+WN+DGSST QAPG+DS++ L P  +F DPFR G+NILV+ + +   G P   N R   AK+   H D   ++PW+G+EQEYTL     N P                      K   RDIV +HYKACL+AG  ISGIN EV+P QWEFQ  P
Sbjct:   26 ILAEYIWIDGAN-GVRSKTKTLFKKPSSVEDLPEWNFDGSSTGQAPGEDSDIYLRPVAIFPDPFRMGDNILVLAECWNADGSPNKFNHRHECAKIMEAHKD---QKPWFGLEQEYTLFDLYGN-PYGWPKGGFPGPQGPYYCGVGTGKVYCRDIVEAHYKACLFAGIKISGINAEVLPSQWEFQVGP 207          

HSP 2 Score: 30.4166 bits (67), Expect = 6.526e-41
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPCVGI  GD LW+
Sbjct:  205 VGPCVGIEMGDHLWI 219          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.443e-40
Identity = 82/188 (43.62%), Postives = 110/188 (58.51%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EK+   Y+W+ G+G  LR K RTL        +LP+WN+DGSST Q+ G +S++ L+P  +F+DPFRR  N LV C+ +    +P  TN R +  ++     V ++ PW+G+EQEYTL+  D   P                    ADKA GRDIV +HY+ACLYAG  I+G N EVMP QWEFQ  P
Sbjct:   24 EKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRIMDM--VSSQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 27.335 bits (59), Expect = 1.443e-40
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIRMGDHLWV 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 160.229 bits (404), Expect = 1.443e-40
Identity = 84/189 (44.44%), Postives = 113/189 (59.79%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+W+ G+G  LR K RTL        +LP+WN+DGSST Q+ G +S++ L+P  +F+DPFR+  N LV+C+ +    +P  TN R    ++    D+V+ + PW+G+EQEYTL+  D   P                    ADKA GRDIV +HY+ACLYAG  I+G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 27.335 bits (59), Expect = 1.443e-40
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIRMGDHLWI 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.443e-40
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+WI G+G  LR K RTL +      +LP+WN+DGSST Q+ G +S++ L P  +F+DPFR+  N LV C+ +    +P  TN R    ++    D+V+ + PW+G+EQEYTL+  D   P                    ADKA GRDIV +HY+ACLYAG  I G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 27.7202 bits (60), Expect = 1.443e-40
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIDMGDHLWV 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.880e-40
Identity = 85/190 (44.74%), Postives = 114/190 (60.00%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+WI G+G  LR K RTL +      +LP+WN+DGSST Q+ G +S++ L P  +F+DPFR+  N LV+C+++    E P  TN R    ++    D+V+ + PW+G+EQEYTL+  D   P                    AD+A GRDIV +HY+ACLYAG  I+G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCESFQVQFEGPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGP 209          

HSP 2 Score: 29.261 bits (64), Expect = 1.880e-40
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GIS GD LW+
Sbjct:  207 IGPCEGISMGDHLWV 221          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.449e-40
Identity = 86/189 (45.50%), Postives = 109/189 (57.67%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+WI G+G  LR K RTL         LP+WN+DGSST QA G +S++ L P  +F+DPFR+  N LV+C+ +    +   TN R    ++    D+V+ + PW+G+EQEYTLL  D   P                    ADKA GRDIV +HY+ACLYAG  I G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWIDGTGEHLRCKTRTLDHEPKSLEDLPEWNFDGSSTFQAEGSNSDMYLRPAAMFRDPFRKDPNKLVLCEVFKYNRQSADTNLRHTCRRIM---DMVSNQHPWFGMEQEYTLLGTD-GHPFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGP 208          

HSP 2 Score: 28.1054 bits (61), Expect = 2.449e-40
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GD LW+
Sbjct:  206 VGPCEGIEMGDHLWI 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.450e-40
Identity = 93/191 (48.69%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTD--PTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLLQKDIN-WPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            ++IAEY+WI   G   RSK+RTLP   +   P +LP WN+DGSST QAPG++S+V L P  VF DPFR   NILV+ + +   G P   N R  AAK+   H D V   PW+G+EQEYTLL  DIN  P                      K + RDIV +HYK CLYAG  ISG N EVMP QWEFQ  P
Sbjct:   25 QLIAEYIWIDSEG-GTRSKSRTLPEKESQYLPEELPIWNFDGSSTGQAPGENSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKFNHRHEAAKLMEAHADQV---PWFGLEQEYTLL--DINDRPYGWPRNGFPAPQGPYYCGVGTGKVVQRDIVEAHYKCCLYAGVKISGTNAEVMPAQWEFQVGP 209          

HSP 2 Score: 28.1054 bits (61), Expect = 2.450e-40
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GD LW+
Sbjct:  207 VGPCDGIEMGDHLWL 221          
The following BLAST results are available for this feature:
BLAST of FC930658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_SCHPO2.950e-4146.60Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_CANFA5.006e-4144.97Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_HUMAN5.006e-4144.44Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_TUBBO6.526e-4144.92Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_RAT1.443e-4043.62Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_MOUSE1.443e-4044.44Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_PIG1.443e-4044.97Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_MACFA1.880e-4044.74Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_CHICK2.449e-4045.50Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_NEUCR2.450e-4048.69Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]

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Properties
Property NameValue
Genbank descriptionC34009H06EF PostHarvC1 Citrus clementina cDNA clone C34009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930658 ID=FC930658; Name=FC930658; organism=Citrus clementina; type=EST; length=732bp
GGTCTCTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGTTTT
CGTTTCAAACAAACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAAC
GATCTCCTCAACCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGA
ATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAA
CTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGGAATTAC
GATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTT
GTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCC
TGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAAC
AAAAGATTCAATGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGA
AGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACA
TAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGA
CCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAAATTACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAGTGGGTCCCTGTG
TGGGTATCTCTTCTGGTGATCAGTTATGGATG
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