FC930658

Overview
NameFC930658
Unique NameFC930658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 3.191e-40
Identity = 84/189 (44.44%), Postives = 112/189 (59.26%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+W+ G+G  LR K RTL        +LP+WN+DGSST Q+ G +S++ L P  +F+DPFR+  N LV C+ +    +P  TN R +  ++    D+V+ + PW+G+EQEYTL+  D   P                    ADKA GRDIV +HY+ACLYAG  I+G N EVMP QWEFQ  P
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 27.335 bits (59), Expect = 3.191e-40
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIRMGDHLWV 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 158.688 bits (400), Expect = 3.191e-40
Identity = 84/189 (44.44%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            +KV A Y+WI G+G  LR K RTL +      +LP+WN+DGSST Q+ G +S++ L P  +F+DPFR+  N LV C+ +    +P  TN R    ++    D+V+ + PW+G+EQEYTL+  D   P                    ADKA GRDIV +HY+ACLYAG  I G N EVMP QWEFQ  P
Sbjct:   24 DKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQRPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGP 208          

HSP 2 Score: 27.7202 bits (60), Expect = 3.191e-40
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIDMGDHLWV 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.159e-40
Identity = 80/186 (43.01%), Postives = 108/186 (58.06%), Query Frame = 2
Query:  140 VIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            V+AEY+WI     ++RSK +TL    T    LP+WN+DGSST+QAPG DS++ L P  ++ DPFRRG+NI+V+ + +   G P   N R   AK+    +   E  W+GIEQEYT+  +  N P+                     K   RD+V +HY+ACLY+G  ISGIN EVMP QWE+Q  P
Sbjct:   15 VLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMSAHE--KEVIWFGIEQEYTMFDESDN-PVGWPKGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGP 196          

HSP 2 Score: 29.6462 bits (65), Expect = 4.159e-40
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GIS  D+LWM
Sbjct:  194 VGPCEGISMADELWM 208          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.059e-40
Identity = 84/188 (44.68%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVF-GHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            KV+AEYVWI   G + RSK +TL    +    LP+WN+DGSST QAPG DS+V L P   + DPFR+G+NI+V+ + +   G P   N R  +AK+   H D   EE W+G+EQEYTL  +  + P                      K   RD++ +HY+ACL+AG  ISGIN EVMP QWEFQ  P
Sbjct:   22 KVLAEYVWIDADG-NSRSKCKTLDKKPSSVEDLPEWNFDGSSTGQAPGHDSDVYLRPVAFYADPFRKGDNIIVLTECWNNDGTPNKFNHRHESAKLMKAHAD---EEVWFGLEQEYTLFDQ-FDQPYAWPKGGFPAPQGPYYCGVGTGKVYARDLIEAHYRACLHAGVDISGINAEVMPSQWEFQVGP 204          

HSP 2 Score: 28.8758 bits (63), Expect = 7.059e-40
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GD+LW+
Sbjct:  202 VGPCEGIQMGDELWI 216          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.640e-39
Identity = 91/190 (47.89%), Postives = 111/190 (58.42%), Query Frame = 2
Query:  143 IAEYVWIGGSGMDLRSKARTLPAPTTDPTKL---PKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVPV 700
            I EYVWIGG+G +LRSK R L +      KL   P WNYDGSSTNQA G  SEV LYP+ +++ PFRR  N ++V+CD Y   G P+ TN R NA  +F       E+PWYG+EQEY + +KD N P+                   +  A GR I + H +ACLYAG  ISG N EV PGQ EFQ  PV
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIF--EKYQNEKPWYGLEQEYFIFRKDTNQPI---GMEYASKQGQYYCSVGSQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPV 203          

HSP 2 Score: 24.2534 bits (51), Expect = 7.640e-39
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GP  GI + DQLW+
Sbjct:  200 IGPVEGIDAADQLWI 214          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.074e-37
Identity = 83/188 (44.15%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV   YVWI G+G  +R K RTL        ++P+WN+DGSST+QA G +S++ L P  +F+DPF    N LVMC+      +   TN R    K+     V    PW+G+EQEYTLL  +   P                    ADK  GRD+V SHYKACLYAG  I G N EVMP QWEFQ  P
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIM--EMVNDHRPWFGMEQEYTLLGIN-GHPYGWPENGFPGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGP 208          

HSP 2 Score: 29.6462 bits (65), Expect = 1.074e-37
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            VGPC GI  GD LWM
Sbjct:  206 VGPCEGIDMGDHLWM 220          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.480e-37
Identity = 84/204 (41.18%), Postives = 113/204 (55.39%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP---------VWVSLLVI 721
            KV A Y+WI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P  +F+DPFRR  N LV+C+      +P  +N R +  K+     +  E PW+G+EQEYTLL  D   P                    ADKA GRDIV +HY+ACLYAG  +SG N EVM  QWE+Q  P         +W+S  ++
Sbjct:   54 KVQAMYIWIDGTGEAVRCKTRTLDNEPKSIAELPEWNFDGSSTYQSEGSNSDMYLVPSAMFRDPFRRDPNKLVLCEVLKYNRKPAESNLRHSCQKIMSM--IANEYPWFGMEQEYTLLGTD-GHPFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIELSGTNAEVMAAQWEYQVGPCEGIQMGDHLWISRFIL 254          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.848e-37
Identity = 79/184 (42.93%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQ 688
            K+ A YVWI G+G +LRSK RT           P WNYDGSST QA G DS+  L P   + DPF  G N LVMCD      +P  T+ R   A++    ++    PW+G+EQEY ++ +D   PL                   AD+A GR++V +HY+ACL+AG  I G N EV PGQWEFQ
Sbjct:   29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIM--HEIRDTRPWFGMEQEYLIVDRD-EHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQ 209          

HSP 2 Score: 28.1054 bits (61), Expect = 6.848e-37
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +G C GI  GDQLWM
Sbjct:  210 IGTCEGIDMGDQLWM 224          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.761e-36
Identity = 85/207 (41.06%), Postives = 118/207 (57.00%), Query Frame = 2
Query:  137 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRG-NNILVMCDAYTPAGEPIPTNKR--FNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP--------VWVSLLVI 721
            +V A Y+WI G+G ++R K R L    +    LP W YDGSST QA G++S+  L P+ +++DPF+ G N+++V+CD Y+  G+P  +NKR  F AA      D+++ +EPW+GIEQEYTLL  D   P                    AD+   RD+V +H  ACLYAG   +G N EVMP QWEFQ  P        +WVS  ++
Sbjct:   61 RVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAAFQAA-----IDLISDQEPWFGIEQEYTLLDVD-GRPFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKACDDLWVSRYIL 261          
BLAST of FC930658 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 144.05 bits (362), Expect = 9.632e-36
Identity = 79/189 (41.80%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  134 EKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVA-EEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGNYISGINGEVMPGQWEFQWVP 697
            EKV A Y+W+ G+G  LR K RTL        +LP+WN+DGSST Q+   +S++ L P  +F+DPFR+  N LV C+ +    +P  TN R    ++    D+V+ + PW+G+EQEYTLL  D   P                    ADKA  RDI+ +HY+ACLYAG  I+G   EV   QWEFQ  P
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLLGTD-GHPFGWPSDGFPGPQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGP 208          

HSP 2 Score: 27.335 bits (59), Expect = 9.632e-36
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  688 VGPCVGISSGDQLWM 732
            +GPC GI  GD LW+
Sbjct:  206 IGPCEGIRMGDHLWV 220          
The following BLAST results are available for this feature:
BLAST of FC930658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_ACOCA3.191e-4044.44Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_BOVIN3.191e-4044.44Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_YARLI4.159e-4043.01Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_DEBHA7.059e-4044.68Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_MIMIV7.640e-3947.89Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_XENLA1.074e-3744.15Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_SQUAC1.480e-3741.18Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_CAEEL6.848e-3742.93Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA1_DROME4.761e-3641.06Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_CRIGR9.632e-3641.80Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]

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Properties
Property NameValue
Genbank descriptionC34009H06EF PostHarvC1 Citrus clementina cDNA clone C34009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930658 ID=FC930658; Name=FC930658; organism=Citrus clementina; type=EST; length=732bp
GGTCTCTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGTTTT
CGTTTCAAACAAACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAAC
GATCTCCTCAACCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGA
ATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAA
CTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGGAATTAC
GATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTT
GTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCC
TGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAAC
AAAAGATTCAATGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGA
AGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACA
TAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGA
CCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGT
GAATTCTCACTACAAAGCTTGCCTTTACGCTGGAAATTACATCAGTGGCA
TTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAGTGGGTCCCTGTG
TGGGTATCTCTTCTGGTGATCAGTTATGGATG
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