FC930661

Overview
NameFC930661
Unique NameFC930661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A3_MOUSE (Solute carrier family 22 member 3 OS=Mus musculus GN=Slc22a3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 66/240 (27.50%), Postives = 110/240 (45.83%), Query Frame = 2
Query:    2 VTLRGLVGI-GLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            V  R L G+ G G+   C     E + +  R ++ +VI  F+TLG I    +A+      +W+ +    S+PSF  LL Y + PE+P++L T      A  +L ++A+ N  +L S      E    DEEV  P    L+ +   +               + TL+L F +F ++ VY G+++    +                    +LY++ FI+ L ELPG LL  + ++R+GR+ P
Sbjct:  204 VIFRFLQGVFGKGAWMTCFVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFTP---SWQGIQLAISLPSFLFLLYYWVVPESPRWLITRKQGEKALQILRRVAKCNGKHLSSNY---SEITVTDEEVSNPSCLDLVRTPQMR---------------KCTLILMFAWFTSAVVYQGLVMRLGLIG------------------GNLYIDFFISGLVELPGALLILLTIERLGRRLP 404          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A3_HUMAN (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 65/240 (27.08%), Postives = 110/240 (45.83%), Query Frame = 2
Query:    2 VTLRGLVGI-GLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            V  R L G+ G G+   C     E + +  R ++ +VI  F+TLG I    +A+ +    NW+ +    ++PSF  LL Y + PE+P++L T      A  +L ++A+ N   L S      E    DEEV  P    L+ +   +               + TL+L F +F ++ VY G+++    +                    +LY++ FI+ + ELPG LL  + ++R+GR+ P
Sbjct:  209 VIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIP---NWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNY---SEITVTDEEVSNPSFLDLVRTPQMR---------------KCTLILMFAWFTSAVVYQGLVMRLGIIG------------------GNLYIDFFISGVVELPGALLILLTIERLGRRLP 409          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A3_RAT (Solute carrier family 22 member 3 OS=Rattus norvegicus GN=Slc22a3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 66/240 (27.50%), Postives = 110/240 (45.83%), Query Frame = 2
Query:    2 VTLRGLVGI-GLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            V  R L G+ G G+   C     E + +  R ++ +VI  F+TLG I    +A+      +W+ +    S+PSF  LL Y + PE+P++L T      A  +L ++A+ N  +L S      E    DEEV  P    L+ +   +               + TL+L F +F ++ VY G+++    +                    +LY++ FI+ L ELPG LL  + ++R+GR+ P
Sbjct:  204 VIFRFLQGVFGKGAWMTCFVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFTP---SWQGIQLAISLPSFLFLLYYWVVPESPRWLITRKQGEKALQILRRVAKCNGKHLSSNY---SEITVTDEEVSNPSCLDLVRTPQMR---------------KCTLILMFAWFTSAVVYQGLVMRLGLIG------------------GNLYMDFFISGLVELPGALLILLTIERLGRRLP 404          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A1_MOUSE (Solute carrier family 22 member 1 OS=Mus musculus GN=Slc22a1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 57/221 (25.79%), Postives = 100/221 (45.25%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSG--MLVSDETATPDEEVIIPE--HTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+ +  R    ++    +T+G +  A +A+ +    +WRWL    S+P+F  LL Y   PE+P++L +      A  ++E++AQ+NR   P+   M+  +E A+        +   TP L                     + TL+L +L+F  + +Y G+I+                     A  A+LY++ F +SL E P   +  V +DR+GR +P
Sbjct:  227 EFVGSGYRRTTAILYQVAFTVGLVGLAGVAYAIP---DWRWLQLAVSLPTFLFLLYYWFVPESPRWLLSQKRTTQAVRIMEQIAQKNRKVPPADLKMMCLEEDASERRSPSFADLFRTPSLR--------------------KHTLILMYLWFSCAVLYQGLIMHVG------------------ATGANLYLDFFYSSLVEFPAAFIILVTIDRIGRIYP 406          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A1_HUMAN (Solute carrier family 22 member 1 OS=Homo sapiens GN=SLC22A1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 62/239 (25.94%), Postives = 111/239 (46.44%), Query Frame = 2
Query:    8 LRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSG--MLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            L+GLV  G       L    EF+ + +R  + ++    +T+G +    LA+ +    +WRWL    S+P+F  LL Y   PE+P++L +     +A  +++ +AQ+N    P+   ML  +E  T   E + P    L  +   +               + T +L +L+F +S +Y G+IL            G+T          +LY++   ++L E+PG  ++ + +DRVGR +P
Sbjct:  208 LQGLVSKGNWMAGYTL--ITEFVGSGSRRTVAIMYQMAFTVGLVALTGLAYALP---HWRWLQLAVSLPTFLFLLYYWCVPESPRWLLSQKRNTEAIKIMDHIAQKNGKLPPADLKMLSLEEDVT---EKLSPSFADLFRTPRLR---------------KRTFILMYLWFTDSVLYQGLIL----------HMGAT--------SGNLYLDFLYSALVEIPGAFIALITIDRVGRIYP 405          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A1_RABIT (Solute carrier family 22 member 1 OS=Oryctolagus cuniculus GN=SLC22A1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 64/239 (26.78%), Postives = 107/239 (44.77%), Query Frame = 2
Query:    8 LRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSG--MLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            L+GLV  G       L    EF+ +  R  + ++    +++G +  + +A+ +    NWRWL    S+P+F  L  Y   PE+P++L +     DA  +++ +AQ+N    P+   ML  DE  T   E + P    L  +   +               + T +L FL+F  S +Y G+IL            G+T          ++Y++ F +SL E P   +  V +DRVGR +P
Sbjct:  208 LQGLVSKGSWMSGYTL--ITEFVGSGYRRTVAILYQVAFSVGLVALSGVAYAIP---NWRWLQLTVSLPTFLCLFYYWCVPESPRWLLSQKRNTDAVKIMDNIAQKNGKLPPADLKMLSLDEDVT---EKLSPSLADLFRTPNLR---------------KHTFILMFLWFTCSVLYQGLIL----------HMGAT--------GGNVYLDFFYSSLVEFPAAFVILVTIDRVGRIYP 405          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A2_RAT (Solute carrier family 22 member 2 OS=Rattus norvegicus GN=Slc22a2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 52/220 (23.64%), Postives = 104/220 (47.27%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEV---IIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+    R M+ +     +T+G +  A +A+++    NWRWL    ++P+F  LL +   PE+P++L +   +  A  +++ +A++N  ++P    VS +  TPDE+    + P    L+ +   +               + TL+L + +F +S +Y G+I+                         ++Y++ F ++L E P   +  + +DRVGR++P
Sbjct:  227 EFVGLGYRRMVGICYQIAFTVGLLILAGVAYVIP---NWRWLQFAVTLPNFCFLLYFWCIPESPRWLISQNKIVKAMKIIKHIAKKNGKSVP----VSLQNLTPDEDAGKKLNPSFLDLVRTPQIR---------------KHTLILMYNWFTSSVLYQGLIMHMGLAGD------------------NIYLDFFYSALVEFPAAFIIILTIDRVGRRYP 406          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A1_RAT (Solute carrier family 22 member 1 OS=Rattus norvegicus GN=Slc22a1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 56/221 (25.34%), Postives = 99/221 (44.80%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSG--MLVSDETATPDEEVIIPE--HTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+ +  R    ++    +T+G +  A +A+ +    +WRWL    S+P+F  LL Y   PE+P++L +      A  ++E++AQ+N    P+   ML  +E A+        +   TP L                     + T++L +L+F  + +Y G+I+                     A  A+LY++ F +SL E P   +  V +DR+GR +P
Sbjct:  227 EFVGSGYRRTTAILYQMAFTVGLVGLAGVAYAIP---DWRWLQLAVSLPTFLFLLYYWFVPESPRWLLSQKRTTRAVRIMEQIAQKNGKVPPADLKMLCLEEDASEKRSPSFADLFRTPNLR--------------------KHTVILMYLWFSCAVLYQGLIMHVG------------------ATGANLYLDFFYSSLVEFPAAFIILVTIDRIGRIYP 406          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A2_PIG (Solute carrier family 22 member 2 OS=Sus scrofa GN=SLC22A2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 53/220 (24.09%), Postives = 103/220 (46.82%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEV---IIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+  S R  + +     +T G +  A +A+ +    +WRWL    ++P+F  L  Y   PE+P++L +    A A  +++ +A++N  +LP+ +    ++  PDEEV   + P    L+ +   +               + TL+L + +F ++ +Y G+++      S                  +LY++ F ++L E P  LL  + +DR+GR+ P
Sbjct:  226 EFVGLSYRRTVGIFYQVAFTFGLLVLAGVAYALP---HWRWLQFTVTLPNFCFLFYYWCVPESPRWLISQNKNAKAMSIIKHIAKKNGKSLPASL----QSLRPDEEVGEKLKPSFLDLVRTPQIR---------------KHTLILMYNWFTSAVLYQGLVMHMGLAGS------------------NLYLDFFYSALVEFPAALLILLTIDRLGRRHP 405          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A2_RABIT (Solute carrier family 22 member 2 OS=Oryctolagus cuniculus GN=SLC22A2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 54/217 (24.88%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+  + R  + ++    +T+G +  A +A+  +PR  WRWL    ++P F  LL Y   PE+P++L +    A A  ++E +A++N  +LP   L S   A    E + P    L+ +   +               + T +L + +F +S +Y G+I+       +                  +Y++ F ++L E P   L    +DRVGR++P
Sbjct:  226 EFVGLNYRRTVGILYQVAFTVGLLVLAGVAY-ALPR--WRWLQLTVTLPYFCFLLYYWCIPESPRWLISQNKNAKAMRIMEHIAKKNGKSLPVS-LQSLRAAEDVGEKLNPSFLDLVRTPQIR---------------KHTCILMYNWFTSSVLYQGLIMHLGLAGGD------------------IYLDFFYSALVEFPAAFLIIATIDRVGRRYP 405          
The following BLAST results are available for this feature:
BLAST of FC930661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
S22A3_MOUSE3.673e-1727.50Solute carrier family 22 member 3 OS=Mus musculus ... [more]
S22A3_HUMAN4.796e-1727.08Solute carrier family 22 member 3 OS=Homo sapiens ... [more]
S22A3_RAT6.264e-1727.50Solute carrier family 22 member 3 OS=Rattus norveg... [more]
S22A1_MOUSE2.228e-1425.79Solute carrier family 22 member 1 OS=Mus musculus ... [more]
S22A1_HUMAN3.800e-1425.94Solute carrier family 22 member 1 OS=Homo sapiens ... [more]
S22A1_RABIT1.106e-1326.78Solute carrier family 22 member 1 OS=Oryctolagus c... [more]
S22A2_RAT1.886e-1323.64Solute carrier family 22 member 2 OS=Rattus norveg... [more]
S22A1_RAT4.202e-1325.34Solute carrier family 22 member 1 OS=Rattus norveg... [more]
S22A2_PIG7.167e-1324.09Solute carrier family 22 member 2 OS=Sus scrofa GN... [more]
S22A2_RABIT6.068e-1224.88Solute carrier family 22 member 2 OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionC34009H09EF PostHarvC1 Citrus clementina cDNA clone C34009H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930661 ID=FC930661; Name=FC930661; organism=Citrus clementina; type=EST; length=718bp
GGTTACTCTCCGTGGTTTAGTCGGTATTGGCCTAGGCAGTGGGCCTGTAT
GTTTATCCTGGTTTCTAGAGTTCATTCCTGCTTCAAATAGAGGCATGTTG
ATGGTTGTTATATCAACCTTCTGGACGCTAGGAACAATATTTGAGGCTGC
CCTTGCATGGATGGTGATGCCCAGATTGAATTGGAGATGGCTACTTGCTT
TGAGCTCTGTACCTTCATTTGCTGTGCTTCTACTTTACGGTCTTGCACCG
GAAACTCCAAAGTATCTATGTACTGCAGGTAACATGGCTGATGCTGCTCA
CGTTCTGGAGAAAATGGCTCAAAGGAACAGGACAAATCTCCCATCAGGAA
TGCTTGTTTCTGATGAAACTGCTACACCGGATGAAGAAGTTATTATACCA
GAACATACACCTCTCCTCTCTTCGACTGTAAATAAATCAGGATCCTCATC
TTTTCTCATGCTGTTGTCATCAGAATTAATCAGAACTACCCTTCTGTTAT
GGTTTCTCTTCTTTGGAAATTCATTCGTATATTATGGGGTTATATTGTTG
ACATCAGAATTAAATAGTGAGGAAGCCAGATGTGGCTCAACTCTCTTGCT
TTTGGAACATGCCCAGGATGCCAGCCTATACGTTAATGTATTTATCACTA
GCTTGGCAGAACTTCCCGGGCTTCTGTTATCAGCAGTGATTGTGGACAGA
GTTGGACGCAAGTTTCCA
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