FC930661

Overview
NameFC930661
Unique NameFC930661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A1_BOVIN (Solute carrier family 22 member 1 OS=Bos taurus GN=SLC22A1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 59/239 (24.69%), Postives = 107/239 (44.77%), Query Frame = 2
Query:    8 LRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSG--MLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            L+GLV  G  +    L    EF+    R  + ++    +T+G +  + LA+ ++P  +WRWL    S+P F +L  +   PE+P++L +     +A  +++ +AQ+N    P+   ML  +E  T   E + P    L  +   +               + T +L +L+F +S VY G+I+                     A   +LY++   ++L E P   +  V +DR GR++P
Sbjct:  203 LQGLVSKGSWTAGYTL--ITEFVGLGYRRTVAILYQMAFTVGLVLLSGLAY-ILP--HWRWLQLAVSLPIFLLLFRFWFVPESPRWLLSQKRNTEAIKIMDHIAQKNGKLPPADLKMLSLEEDVT---EKLSPSFIDLFRTPNLR---------------KYTFILMYLWFTSSVVYQGLIMHVG------------------ATGGNLYLDFLYSALVEFPAGFIILVTIDRFGRRYP 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A2_MOUSE (Solute carrier family 22 member 2 OS=Mus musculus GN=Slc22a2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 50/217 (23.04%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+    R  + +     +T+G +  A +A+ +    NWRWL    ++P+F  LL +   PE+P++L +    A A  +++ +A++N  ++P    VS ++ T DE+            T  K               + TL+L + +F +S +Y G+I+                         ++Y++ F ++L E P   +  + +DR+GR++P
Sbjct:  227 EFVGLGYRRTVGICYQIAFTVGLLILAGVAYALP---NWRWLQFAVTLPNFCFLLYFWCIPESPRWLISQNKNAKAMKIIKHIAKKNGKSVP----VSLQSLTADED------------TGMKLNPSFLDLVRTPQIRKHTLILMYNWFTSSVLYQGLIMHMGLAGD------------------NIYLDFFYSALVEFPAAFIIILTIDRIGRRYP 406          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A2_PONAB (Solute carrier family 22 member 2 OS=Pongo abelii GN=SLC22A2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 49/220 (22.27%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSG---MLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+    R  + +     +T+G +  A +A+ +    +WRWL    ++P+F  LL Y   PE+P++L +    A+A  +++ +A++N  +LP+    + + +ET     E + P    L+ +   +               + T++L + +F +S +Y G+I+                         ++Y++ F ++L E P   +  V +DR+GR++P
Sbjct:  227 EFVGRRYRRTVGIFYQVAYTVGLLVLAGVAYALP---HWRWLQFTVTLPNFFFLLYYWCIPESPRWLISQNKNAEAMRIIKHIAKKNGKSLPASLQCLRLEEETG----EKLNPSFLDLVRTPQIR---------------KHTMILMYNWFTSSVLYQGLIMHMGLAGD------------------NIYLDFFYSALVEFPAAFMIIVTIDRIGRRYP 406          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: ORCT_DROME (Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 56/218 (25.69%), Postives = 97/218 (44.50%), Query Frame = 2
Query:   65 LEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGML--VSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            LE + +S R    V +  F+++G +  A  A+ +    +WRWL    ++P    L  Y + PE+ ++L   G   +A  ++EK A+ N+  +P+ +   + DE A   ++  +    P  ++TV                 R TLL++F +F NS VYYG+   T+ L   +                   VN  I+   E+PG  L    ++R GR+
Sbjct:  207 LEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIH---DWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIYEQLVDEVAEKKKQDEMAASQP--AATV-------FDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSWNTNNLGGNQ------------------LVNFMISGAVEIPGYTLLLFTLNRWGRR 394          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A1_PIG (Solute carrier family 22 member 1 OS=Sus scrofa GN=SLC22A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 56/236 (23.73%), Postives = 104/236 (44.07%), Query Frame = 2
Query:    8 LRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKF 715
            L+GLV    GS     +   EF+    R  + ++  T +++G +  + LA+ V    +WR L    S+P F +LL Y   PE+P++L +      A  +++++AQ+N    P+ +    +  + +EEV+    +P                       + T +L +L+F +S +Y G+I+                     A   SLY++   ++L E P   +  +I+DR GR +
Sbjct:  207 LQGLVS--KGSWMAGYTLITEFVGLGYRKTVAILYQTAFSVGLVLLSGLAYAVP---HWRSLQLAVSLPIFLLLLCYWFVPESPRWLLSQKRNTQAIKIMDRIAQKNGKLPPADL----KMLSLEEEVVTERLSPSFLDLFRTQNLR-----------KYTFILMYLWFTSSVLYQGLIMHVG------------------ATGGSLYLDFLYSALVEFPAAFVILLIIDRFGRLY 404          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: S22A2_HUMAN (Solute carrier family 22 member 2 OS=Homo sapiens GN=SLC22A2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 46/217 (21.20%), Postives = 95/217 (43.78%), Query Frame = 2
Query:   68 EFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKFP 718
            EF+    R  + +     +T+G +  A +A+ +    +WRWL    ++P+F  LL Y   PE+P++L +    A+A  +++ +A++N  +LP+ +                +   L   T  K               + T++L + +F +S +Y G+I+                         ++Y++ F ++L E P   +  + +DR+GR++P
Sbjct:  227 EFVGRRYRRTVGIFYQVAYTVGLLVLAGVAYALP---HWRWLQFTVALPNFFFLLYYWCIPESPRWLISQNKNAEAMRIIKHIAKKNGKSLPASL----------------QRLRLEEETGKKLNPSFLDLVRTPQIRKHTMILMYNWFTSSVLYQGLIMHMGLAGD------------------NIYLDFFYSALVEFPAAFMIILTIDRIGRRYP 406          
The following BLAST results are available for this feature:
BLAST of FC930661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
S22A1_BOVIN7.924e-1224.69Solute carrier family 22 member 1 OS=Bos taurus GN... [more]
S22A2_MOUSE1.352e-1123.04Solute carrier family 22 member 2 OS=Mus musculus ... [more]
S22A2_PONAB2.306e-1122.27Solute carrier family 22 member 2 OS=Pongo abelii ... [more]
ORCT_DROME3.011e-1125.69Organic cation transporter protein OS=Drosophila m... [more]
S22A1_PIG3.933e-1123.73Solute carrier family 22 member 1 OS=Sus scrofa GN... [more]
S22A2_HUMAN5.136e-1121.20Solute carrier family 22 member 2 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34009H09EF PostHarvC1 Citrus clementina cDNA clone C34009H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930661 ID=FC930661; Name=FC930661; organism=Citrus clementina; type=EST; length=718bp
GGTTACTCTCCGTGGTTTAGTCGGTATTGGCCTAGGCAGTGGGCCTGTAT
GTTTATCCTGGTTTCTAGAGTTCATTCCTGCTTCAAATAGAGGCATGTTG
ATGGTTGTTATATCAACCTTCTGGACGCTAGGAACAATATTTGAGGCTGC
CCTTGCATGGATGGTGATGCCCAGATTGAATTGGAGATGGCTACTTGCTT
TGAGCTCTGTACCTTCATTTGCTGTGCTTCTACTTTACGGTCTTGCACCG
GAAACTCCAAAGTATCTATGTACTGCAGGTAACATGGCTGATGCTGCTCA
CGTTCTGGAGAAAATGGCTCAAAGGAACAGGACAAATCTCCCATCAGGAA
TGCTTGTTTCTGATGAAACTGCTACACCGGATGAAGAAGTTATTATACCA
GAACATACACCTCTCCTCTCTTCGACTGTAAATAAATCAGGATCCTCATC
TTTTCTCATGCTGTTGTCATCAGAATTAATCAGAACTACCCTTCTGTTAT
GGTTTCTCTTCTTTGGAAATTCATTCGTATATTATGGGGTTATATTGTTG
ACATCAGAATTAAATAGTGAGGAAGCCAGATGTGGCTCAACTCTCTTGCT
TTTGGAACATGCCCAGGATGCCAGCCTATACGTTAATGTATTTATCACTA
GCTTGGCAGAACTTCCCGGGCTTCTGTTATCAGCAGTGATTGTGGACAGA
GTTGGACGCAAGTTTCCA
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