FC930666

Overview
NameFC930666
Unique NameFC930666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACTB_CAVPO (Actin, cytoplasmic 1 OS=Cavia porcellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 217/239 (90.79%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   13 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG 251
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACTB_CANFA (Actin, cytoplasmic 1 OS=Canis familiaris GN=ACTB PE=2 SV=3)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 217/239 (90.79%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   13 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG 251
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACTB_BOVIN (Actin, cytoplasmic 1 OS=Bos taurus GN=ACTB PE=1 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 217/239 (90.79%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   13 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG 251
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACTA_LIMPO (Actin, acrosomal process isoform OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 218/239 (91.21%), Postives = 230/239 (96.23%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+E E+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEHEMTTAASSSSLEKSYELPDGQVITIG 252
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT5_XENLA (Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 217/239 (90.79%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG 252
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT5_CHICK (Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 217/239 (90.79%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG 252
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT5_BACDO (Actin-5, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 216/239 (90.38%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEK+WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+  S+++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKVWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 252
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT4_CAEEL (Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV=2)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 216/239 (90.38%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVIT+G
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVG 252
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT3_BACDO (Actin-3, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 217/239 (90.79%), Postives = 230/239 (96.23%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+  S+++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 252
[Close]
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT1_CAEEL (Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 SV=2)

HSP 1 Score: 445.662 bits (1145), Expect = 1.212e-124
Identity = 216/239 (90.38%), Postives = 231/239 (96.65%), Query Frame = 3 
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SS++E+SYELPDGQVIT+G
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVG 252
The following BLAST results are available for this feature:
BLAST of FC930666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
ACTB_CAVPO1.212e-12490.79Actin, cytoplasmic 1 OS=Cavia porcellus GN=ACTB PE... [more]
ACTB_CANFA1.212e-12490.79Actin, cytoplasmic 1 OS=Canis familiaris GN=ACTB P... [more]
ACTB_BOVIN1.212e-12490.79Actin, cytoplasmic 1 OS=Bos taurus GN=ACTB PE=1 SV... [more]
ACTA_LIMPO1.212e-12491.21Actin, acrosomal process isoform OS=Limulus polyph... [more]
ACT5_XENLA1.212e-12490.79Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 S... [more]
ACT5_CHICK1.212e-12490.79Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV... [more]
ACT5_BACDO1.212e-12490.38Actin-5, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT4_CAEEL1.212e-12490.38Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV... [more]
ACT3_BACDO1.212e-12490.79Actin-3, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT1_CAEEL1.212e-12490.38Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010A02EF PostHarvC1 Citrus clementina cDNA clone C34010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930666 ID=FC930666; Name=FC930666; organism=Citrus clementina; type=EST; length=729bp
ATCTGGCCGGGGGAACGGGAATGGTTAAGGCTCGGTTTGCCGGAGATGAT
GCTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGG
TGTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTC
AATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATT
GTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAA
TGAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTC
CTCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAG
ACCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTCCTT
GTATGCGAGTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTG
TCAGCCATACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATA
CTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAAT
CCTCACTGAGCGTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTG
TCAGGGACATGAAGGAAAAGCTGGCTTACATCGCTCTTGACTATGAACAG
GAGCTTGAGACCTCCAAGACCAGCTCTGCAGTTGAAGAGAGCTATGAGTT
GCCTGATGGGCAGGTTATCACTATTGGCG
back to top