FC930666

Overview
NameFC930666
Unique NameFC930666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP5_HUMAN (Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 62/233 (26.61%), Postives = 111/233 (47.64%), Query Frame = 3
Query:    3 LAGGTGMVKARFA--GDDA---PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTER--GYSFTTTAEREIVRDMKEKLAYIALDYEQEL 656
            L  G+  V+A +A  G D    PR  F ++  R R        G     VG+   S   +   L+ P +  +  N +  E +  ++F + L V+ +   +HP++LTEA  NP  +R+ M++++FE +  P +   I ++ S Y     +   +G+++ SG   +H +PI EG        R++L G      L ++L  +  G+    T  R  + ++  + +YIA DY +EL
Sbjct:   35 LDNGSFQVRAGWACPGQDPGPEPRLQFRAVCARGRGGA----RGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQH-LGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSMCSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLSR--MEEILHEHSYIAEDYVEEL 260          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP10_HUMAN (Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 55/243 (22.63%), Postives = 109/243 (44.86%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAERE------------IVRDMKEKLAYIALDYEQELETSKTSSAVEESYELP 704
            G    K  FAG+  PR + PS++ R                    A   + +  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F  P++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+    T+ A+ +            ++ D+K +  +++ D ++ L+       ++ + E P
Sbjct:   21 GEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMPKPVRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVS-DLKRGLKIQAAKFNIDGNNERP 240          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  240 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYE 698
            T +  ++V P   P++++  PL       + KA+R ++   +F      N PA+    QAVL+LYA+ RT+GIV++ G  V   +PI  G  +    +  +      LT  L + + E   SF +      VR +KEKL Y+ALDY+ EL +  T ++VE S E
Sbjct:  182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENNISFQSL---YTVRTLKEKLCYVALDYKAEL-SKDTQASVEVSGE 340          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP5_MOUSE (Actin-related protein 5 OS=Mus musculus GN=Actr5 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 56/212 (26.42%), Postives = 106/212 (50.00%), Query Frame = 3
Query:   54 PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTER--GYSFTTTAEREIVRDMKEKLAYIALDYEQELE 659
            PR  F ++  R R  G   G G +   VG+   S   +   L+ P +  +  N +  E +  ++F + L V+ +   +HP++LTEA  NP  +R+ M++++FE +  P +   I ++ S Y     +  ++G+++ SG   +H +P+ EG        R++L G      L ++L  +  G+    T  R  + ++ ++ +YIA DY  EL+
Sbjct:   57 PRLQFRAVCARGRG-GARGGPGPQ---VGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQH-LGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYRIPKVAYGIDSLFSFYHNVPKNALSSGLIISSGYQCTHILPVLEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLSR--MEEILQEHSYIAEDYGAELQ 261          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/168 (23.21%), Postives = 82/168 (48.81%), Query Frame = 3
Query:  174 LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLS-----LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 656
            LK P E  +++NW+  E+I+ + F        +  +HP++LTEA  NP   R++M +++FE +  P++   I A+ S           +  +++  G   +H +P+ +G      + RL++ G  +   L +++  +            +  +  +  +IA+DY++EL
Sbjct:   79 LKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLMQMKYPVHLNAITISRMEKLVHEHCHIAVDYKEEL 246          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 43/169 (25.44%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  174 LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 656
            LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE +  PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +   L+ ++  +            +  +  +  +IA+DY +EL
Sbjct:   82 LKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLMQMKYPVHLNAISISRMEKLVHEHCHIAVDYREEL 249          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP10_MOUSE (Actin-related protein 10 OS=Mus musculus GN=Actr10 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 56/243 (23.05%), Postives = 108/243 (44.44%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAERE------------IVRDMKEKLAYIALDYEQELETSKTSSAVEESYELP 704
            G    K  FAG+  PR + PS++ R                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F  P++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+    T  A+ +            ++ D+K +  +++ D ++ L+       ++ + E P
Sbjct:   21 GEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMSKPIKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGGKALHKELETQLLEQCTVDTGAAKGQSLPSVMGSVPEGVLEDIKVRTCFVS-DLKRGLQIQAAKFNIDGNNERP 240          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP6_SCHPO (Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 60/255 (23.53%), Postives = 111/255 (43.53%), Query Frame = 3
Query:    3 LAGGTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEH--GIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTG--------------IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET--SKTSSAVEESYELPD 707
            L  G   +KA FAG        P+ + R +    +        ++G+E  +     TL++   H  G + +W     +W     N   + P   ++ +LLT+      +      Q++FE F   A      A L  +  G  T               +V+DSG   +H +P+ +      A+ R+D+ G+ LT+ L ++++ R Y+     E  IV ++KE + Y++ ++++++E    K  S +E  Y LPD
Sbjct:   10 LDNGAYHIKAGFAGGKVVE--IPNCLTRSKDGNRL--------FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPD 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 46/184 (25.00%), Postives = 74/184 (40.22%), Query Frame = 3
Query:   36 FAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD-------AYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTER 563
            +AG D P+++ PS  G              +        +        R    +K  +E+G V +WD   + W     NEL +      P +LTE   N K NR K  +I+ E     A Y+   +    +A+GR   +++D G  ++   P+ +G +L  +      AGR L   L   L  R
Sbjct:   30 YAGTDCPQSILPSSFGEIHEAEESTSEDNTEKTRKTRKVFSEQSIPIPRPDYEVKRVVENGQVCDWDSAVEQWSWALRNELHIESNRGIPAMLTEPLWNSKENRSKSLEILLEGMEFEACYLTATSTAVSFATGRPNSLIVDIGHDIASVTPVIDGMSLSKSTRCNHFAGRFLNKLLTDYLKPR 213          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ARP9_SCHPO (SWI/SNF and RSC complexes subunit arp9 OS=Schizosaccharomyces pombe GN=arp9 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 55/200 (27.50%), Postives = 89/200 (44.50%), Query Frame = 3
Query:  183 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKE------KLAYIALDYEQELETSK--------TSSAVEESYELPDGQVITIG 728
            PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE    P   +A + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR +T +L  +L E   +  ++ +     D+ E      K + IA     E +T+K        T++  EE      G++I  G
Sbjct:  113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNNVEEEDPAEDIGKIIASG 311          
The following BLAST results are available for this feature:
BLAST of FC930666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
ARP5_HUMAN1.808e-1126.61Actin-related protein 5 OS=Homo sapiens GN=ACTR5 P... [more]
ARP10_HUMAN1.808e-1122.63Actin-related protein 10 OS=Homo sapiens GN=ACTR10... [more]
ARP8_ARATH2.361e-1132.93Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]
ARP5_MOUSE2.361e-1126.42Actin-related protein 5 OS=Mus musculus GN=Actr5 P... [more]
ARP5_DROME2.361e-1123.21Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP5_DROPS4.027e-1125.44Actin-related protein 5 OS=Drosophila pseudoobscur... [more]
ARP10_MOUSE4.027e-1123.05Actin-related protein 10 OS=Mus musculus GN=Actr10... [more]
ARP6_SCHPO5.260e-1123.53Actin-like protein arp6 OS=Schizosaccharomyces pom... [more]
ARP4_CANGA6.869e-1125.00Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]
ARP9_SCHPO8.972e-1127.50SWI/SNF and RSC complexes subunit arp9 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC34010A02EF PostHarvC1 Citrus clementina cDNA clone C34010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930666 ID=FC930666; Name=FC930666; organism=Citrus clementina; type=EST; length=729bp
ATCTGGCCGGGGGAACGGGAATGGTTAAGGCTCGGTTTGCCGGAGATGAT
GCTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGG
TGTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTC
AATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATT
GTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAA
TGAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTC
CTCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAG
ACCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTCCTT
GTATGCGAGTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTG
TCAGCCATACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATA
CTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAAT
CCTCACTGAGCGTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTG
TCAGGGACATGAAGGAAAAGCTGGCTTACATCGCTCTTGACTATGAACAG
GAGCTTGAGACCTCCAAGACCAGCTCTGCAGTTGAAGAGAGCTATGAGTT
GCCTGATGGGCAGGTTATCACTATTGGCG
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