FC930666

Overview
NameFC930666
Unique NameFC930666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT5_DROME (Actin-87E OS=Drosophila melanogaster GN=Act87E PE=1 SV=1)

HSP 1 Score: 447.203 bits (1149), Expect = 4.165e-125
Identity = 218/239 (91.21%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+  S+++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT2_LUMTE (Actin-2 OS=Lumbricus terrestris GN=ACT2 PE=2 SV=1)

HSP 1 Score: 447.203 bits (1149), Expect = 4.165e-125
Identity = 218/239 (91.21%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+  SS++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 446.817 bits (1148), Expect = 5.440e-125
Identity = 217/239 (90.79%), Postives = 232/239 (97.07%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE++T+ +SS++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 446.817 bits (1148), Expect = 5.440e-125
Identity = 220/233 (94.42%), Postives = 228/233 (97.85%), Query Frame = 3
Query:   30 ARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            A FAGDDAPRAVFPSIVG PRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA EEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGY FTTTAEREIVRDMKE+LAY+ALDYEQEL+T+K+SS+VE++YELPDGQVITIG
Sbjct:    1 AGFAGDDAPRAVFPSIVGHPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAHEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYMFTTTAEREIVRDMKEELAYVALDYEQELDTAKSSSSVEKNYELPDGQVITIG 233          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT_MAYDE (Actin OS=Mayetiola destructor PE=2 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.105e-125
Identity = 217/239 (90.79%), Postives = 232/239 (97.07%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL+Y+ALD+EQE+ T+  S+++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLSYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT5_DIPDE (Actin-5 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT5 PE=2 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.105e-125
Identity = 218/239 (91.21%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+  + +SSA+E+SYELPDGQVITIG
Sbjct:    9 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIG 247          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.105e-125
Identity = 218/239 (91.21%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +S+++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSTSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.105e-125
Identity = 218/239 (91.21%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD++QE+ T+ +SS++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFDQEMATAASSSSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT2_BOMMO (Actin, muscle-type A2 OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.105e-125
Identity = 216/239 (90.38%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE++T+  S+++E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAAASTSLEKSYELPDGQVITIG 252          
BLAST of FC930666 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.105e-125
Identity = 218/239 (91.21%), Postives = 231/239 (96.65%), Query Frame = 3
Query:   12 GTGMVKARFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEESYELPDGQVITIG 728
            G+GM KA FAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ +SSA+E+SYELPDGQVITIG
Sbjct:   14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSALEKSYELPDGQVITIG 252          
The following BLAST results are available for this feature:
BLAST of FC930666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
ACT5_DROME4.165e-12591.21Actin-87E OS=Drosophila melanogaster GN=Act87E PE=... [more]
ACT2_LUMTE4.165e-12591.21Actin-2 OS=Lumbricus terrestris GN=ACT2 PE=2 SV=1[more]
ACTC_BIOOB5.440e-12590.79Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACT6_TOBAC5.440e-12594.42Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT_MAYDE7.105e-12590.79Actin OS=Mayetiola destructor PE=2 SV=1[more]
ACT5_DIPDE7.105e-12591.21Actin-5 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACT4_ARTSX7.105e-12591.21Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_LIMPO7.105e-12591.21Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT2_BOMMO7.105e-12590.38Actin, muscle-type A2 OS=Bombyx mori PE=3 SV=1[more]
ACT1_SCHMA7.105e-12591.21Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010A02EF PostHarvC1 Citrus clementina cDNA clone C34010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930666 ID=FC930666; Name=FC930666; organism=Citrus clementina; type=EST; length=729bp
ATCTGGCCGGGGGAACGGGAATGGTTAAGGCTCGGTTTGCCGGAGATGAT
GCTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGG
TGTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTC
AATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATT
GTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAA
TGAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTC
CTCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAG
ACCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTCCTT
GTATGCGAGTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTG
TCAGCCATACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATA
CTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAAT
CCTCACTGAGCGTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTG
TCAGGGACATGAAGGAAAAGCTGGCTTACATCGCTCTTGACTATGAACAG
GAGCTTGAGACCTCCAAGACCAGCTCTGCAGTTGAAGAGAGCTATGAGTT
GCCTGATGGGCAGGTTATCACTATTGGCG
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