FC930667

Overview
NameFC930667
Unique NameFC930667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 3.962e-67
Identity = 113/229 (49.34%), Postives = 168/229 (73.36%), Query Frame = 3
Query:   45 LKMMIKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKEL-ECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            +++++ L+ L   F  ++S + F++ FD+ W SRWV+SDW + +GK+G   HTAGKW GD + KGIQT  DAR YA+SAK P FSNK + LV+QY+++ EQ ++CGG YIKLL + ++Q  F G++ YS+MFGPD+CG  K+ +HVIL+Y+G+N+ IKKE+ + ETD+LTH YT ++ PD +Y +L+DN+E  +G++  DW++LP ++IK     KP DW D + IDDP
Sbjct:    1 MRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKR-VHVILNYKGKNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.035e-63
Identity = 114/211 (54.03%), Postives = 154/211 (72.99%), Query Frame = 3
Query:  108 FFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQK--KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            +F+E FD  W  RW  S WK S+G AG FK TAGKW+GD + DKGIQT  D++ +AISA +   F N  +  VVQ+S++ EQD++CGG YIK++ A   ++  +FGGD PYS+MFGPDICG   + +HVIL+Y+G+NY IKK+++ ETD+LTH YT +++PD +Y +LID +E  SGS+Y DWD+LPP+ IK   A KP DWD+RE I DP
Sbjct:   21 YFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPEDWDEREEIADP 231          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.127e-60
Identity = 112/230 (48.70%), Postives = 153/230 (66.52%), Query Frame = 3
Query:   45 LKMMIKLLVLFLFFQISVSEIFFEERF-DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP-DDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            +K ++ ++V  L       ++FFEE+F DD W S WV S+    E   G FK TAGK+  DP DDKG++T  DAR YA+S K   FSN+ + LVVQ++++ EQDI+CGG Y+K+    + QK   G+ PY +MFGPDICG   K +HVI SY+G+N+ IKK++ C+ D  TH YT I++PD +Y +LIDN + +SG +  DWD LP +KIK   AKKP DWDD+  I DP
Sbjct:    1 MKAVVLVVVSLLALSSINCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPNKKIKDPEAKKPEDWDDKPTIPDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.362e-58
Identity = 112/229 (48.91%), Postives = 158/229 (69.00%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L    +   I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SAK   FSNK +TLVVQ++++ EQ+I+CGG Y+KL  + ++QK   GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.391e-58
Identity = 109/229 (47.60%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L   ++   ++F+E+F   DGW SRW+ S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA    FSNK +TLVVQ++++ EQ+I+CGG Y+KL    ++Q    GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGK---FVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.391e-58
Identity = 110/229 (48.03%), Postives = 157/229 (68.56%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L    +   ++F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA+   FSNK +TLVVQ++++ EQ+I+CGG Y+KL    ++QK   GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAAAEPAVYFKEQFLDGDDWTNRWVESKHKSDFGK---FVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.735e-58
Identity = 111/229 (48.47%), Postives = 157/229 (68.56%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L    +   I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA+   FSNK +TLVVQ++++ EQ+I+CGG Y+KL    ++QK   GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.782e-58
Identity = 109/227 (48.02%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   57 IKLLVLFLFFQISVSEIFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + LL+  L    +   ++F+E+F   DGW  RW+ S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA+   FSNK + LVVQ++++ EQ+I+CGG Y+KL  A ++QK   GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    5 VPLLLGLLGLAAAEPVVYFKEQFLDGDGWTERWIESKHKSDFGK---FVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQPLVVQFTVKHEQNIDCGGGYVKLFPAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 109/229 (47.60%), Postives = 155/229 (67.69%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L    +   ++F+E+F   DGW SRW+ S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA    FSNK +TLVVQ++++ EQ+I+CGG Y+KL    ++Q    GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGK---FVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 109/229 (47.60%), Postives = 155/229 (67.69%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L    +   ++F+E+F   DGW SRW+ S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA    FSNK +TLVVQ++++ EQ+I+CGG Y+KL    ++Q    GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGK---FVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDP 228          
The following BLAST results are available for this feature:
BLAST of FC930667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CALR_DICDI3.962e-6749.34Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR_CHLRE2.035e-6354.03Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_BOMMO6.127e-6048.70Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_MOUSE3.362e-5848.91Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_HUMAN4.391e-5847.60Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CRIGR4.391e-5848.03Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_RAT5.735e-5848.47Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_RABIT9.782e-5848.02Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_MACFU1.278e-5747.60Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA1.278e-5747.60Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC34010A03EF PostHarvC1 Citrus clementina cDNA clone C34010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930667 ID=FC930667; Name=FC930667; organism=Citrus clementina; type=EST; length=730bp
AGATAATTGGAGTGAGATTCTTAAAACTACAAGCCACAAGGATCCTAAAG
ATGATGATTAAGCTGCTTGTACTTTTCCTTTTCTTTCAAATTTCAGTTTC
TGAGATCTTTTTTGAAGAGCGATTTGACGATGGATGGCGAAGTCGTTGGG
TAATATCAGACTGGAAACGAAGTGAAGGGAAAGCTGGATATTTTAAGCAC
ACAGCTGGAAAGTGGCATGGTGACCCGGATGATAAAGGTATTCAAACTCA
CACCGATGCAAGACACTATGCCATATCTGCAAAAATACCAGAATTTAGCA
ACAAAAACAGAACATTGGTTGTTCAGTATTCTATACGATTTGAGCAAGAC
ATTGAATGTGGTGGATACATAAAACTTCTTTCTGCATATGTCAATCAAAA
GAAATTTGGCGGAGATGCTCCCTACAGTTTAATGTTTGGACCAGATATAT
GTGGCACGCAAAAGAAGCATCTCCATGTTATCCTCTCCTACCAGGGTCAG
AATTACCCCATCAAAAAGGAGCTGGAATGTGAAACAGACAAGTTGACTCA
TTTCTACACATTTATTCTCAGGCCTGATGCCAGTTATAGTATCCTCATTG
ATAACCGAGAGAGGGATTCTGGTAGCATGTACACGGATTGGGATATTCTT
CCTCCACGGAAAATCAAAGCTGTCAATGCCAAAAAGCCAGCGGATTGGGA
TGATAGAGAATATATTGATGATCCTAATGC
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