FC930667

Overview
NameFC930667
Unique NameFC930667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 109/229 (47.60%), Postives = 155/229 (67.69%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + LL+  L    +   ++F+E+F   DGW SRW+ S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA    FSNK +TLVVQ++++ EQ+I+CGG Y+KL    ++Q    GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWD+R  IDDP
Sbjct:    3 LSVPLLLGLLGLAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGK---FVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 109/227 (48.02%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   57 IKLLVLFLFFQISVSEIFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + LL+  L    +   ++F+E+F   DGW  RW+ S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+SA+   FSNK +TLVVQ++++ EQ+I+CGG Y+KL  A ++Q    GD+ Y++MFGPDICG   K +HVI +Y+G+N  I K++ C+ D+ TH YT I+RP+ +Y + IDN + +SGS+  DWD LPP+KIK  +A KP DWDDR  IDDP
Sbjct:    5 VPLLLGLLGLAAADPTVYFKEQFLDGDGWTERWIESKHKPDFGK---FVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDDRAKIDDP 228          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.479e-55
Identity = 106/228 (46.49%), Postives = 154/228 (67.54%), Query Frame = 3
Query:   51 MMIKLLVLFLFFQISVSEIFFEERF-DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP-DDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDD 722
            M + LLV  + F    ++I+F+E F DD W  RW+ S  K   GK   ++ + GK++GD   DKG++T  DA+ Y+I AK  + FSNK ++LV+Q+S++ EQDI+CGG Y+KL+++ VN +   G+ PY +MFGPDICG   K +HVI  Y+ +N+ IKK++ C+ D  TH YT I+  D +Y + ID  + +SG +  DWD LPP+KIK  +AKKP DWD+RE+IDD
Sbjct:    1 MQLSLLVGLVCFSAINAKIYFKEDFSDDDWEKRWIKSKHKDDFGK---WEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSLVIQFSVKHEQDIDCGGGYVKLMASDVNLEDSHGETPYHIMFGPDICGPGTKKVHVIFHYKDRNHMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPPKKIKDPDAKKPEDWDEREFIDD 225          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 104/225 (46.22%), Postives = 146/225 (64.89%), Query Frame = 3
Query:   63 LLVLFLFFQISVSEIFFEERFD-DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPN 728
            ++VL        +E++ +E FD + W   W+ S  K    + G F  T G ++ D + DKGIQT  DAR YA S K   FSN+++ LVVQ+S++ EQ+I+CGG Y+KL    ++Q    G++PY +MFGPDICG   K +HVI SY+G+N+ I K++ C+ D  THFYT I+RPD +Y +LIDN + +SG++  DWD L P+KIK   A KP DWDDR  I DP+
Sbjct:    7 VIVLLATVGFISAEVYLKENFDNENWEDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHEQNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAPKKIKDPTATKPEDWDDRATIPDPD 229          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.570e-54
Identity = 107/226 (47.35%), Postives = 153/226 (67.70%), Query Frame = 3
Query:   57 IKLLVLFLFFQISVSEIFFEERFDDG-WRSRWVISDWKRSEGKAGYFKHTAGKWHG-DPDDKGIQTHTDARHYAISAKIP-EFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDD 722
            +K L L     +  +E++F+E F+D  W  RWV S  K   G    FK +AGK+   +  D+GIQT  DA+ Y+ +AK   +FSNK +TLV+QY+++ EQ I+CGG Y+K++ A  +   F G+ PY++MFGPDICG  ++ +HVIL+Y+G+N  IKKE+ C++D+LTH YT IL  D +Y + ID     +GS+  DWD+LP +KIK  +AKKP DWD+REYIDD
Sbjct:    1 MKSLCLLAIVAVVSAEVYFKEEFNDASWEKRWVQSKHKDDFGA---FKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGPTRR-VHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDD 222          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.570e-54
Identity = 107/226 (47.35%), Postives = 152/226 (67.26%), Query Frame = 3
Query:   57 IKLLVLFLFFQISVSEIFFEERFDDG-WRSRWVISDWKRSEGKAGYFKHTAGKWHG-DPDDKGIQTHTDARHYAISAKIP-EFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDD 722
            +K L L     +  +E++F+E F+D  W  RWV S  K   G    FK +AGK+   +  D+GIQT  DA+ Y+ +AK   EFSNK +TLV+QY+++ EQ I+CGG Y+K++    +   F G+ PY++MFGPDICG  ++ +HVIL+Y+G+N  IKKE+ C++D+LTH YT IL  D +Y + ID     +GS+  DWD+LP +KIK  +AKKP DWD+REYIDD
Sbjct:    1 MKSLCLLAIVAVVSAEVYFKEEFNDASWEKRWVQSKHKDDFGA---FKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRGDADLADFHGETPYNVMFGPDICGPTRR-VHVILNYKGENKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDD 222          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.257e-53
Identity = 103/229 (44.98%), Postives = 153/229 (66.81%), Query Frame = 3
Query:   54 MIKLLVLFLFFQISVS-EIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP-DDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPN 728
            M+ +L+  L  + ++  E++F E F +     WV S +     K G FK  AGK   DP +D G++T  DAR Y I+ KI E FSN+ +T+V+Q++++F++ + CGG YIKLL + ++ KKF G++PY +MFGPDICG   K +HVI +Y+G+N+ IKKE+ C+ D  TH YT I+ P+  Y +L+DN + + GS+  DWD+LPP+KI   N KKP DW D ++IDDP+
Sbjct:    1 MLSILLTLLLSKYALGHEVWFSETFPNESIENWVQSTYNAE--KQGEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTMVLQFTVKFDKTVSCGGAYIKLLGSDIDPKKFHGESPYKIMFGPDICGMATKKVHVIFNYKGKNHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPPKKIDDPNDKKPDDWVDEQFIDDPD 227          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.199e-51
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   66 LVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP-DDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            L L L  Q  +S I+++E F+  W +RW  S  K   GK   FK T+GK++GD   D GIQT  DA+ YAIS+ I   FSN+ + LV+Q+S++ EQDI+CGG Y+KLL + V+  KF GD PY +MFGPDICG  KK +H IL+Y+G+N   KKE  CETD L+H YT +++ D +Y +L+D  +++SG++  DW+IL P+ I     KKPADW D   + DP
Sbjct:    7 LGLLLSSQAVLSTIYYKETFEPDWETRWTHSTAKSDYGK---FKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDLVLQFSVKHEQDIDCGGGYLKLLPS-VDAAKFTGDTPYHIMFGPDICGATKK-IHFILTYKGKNLLWKKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTLEEDWEILKPKTIPDPEDKKPADWVDEPDMVDP 224          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.465e-45
Identity = 92/220 (41.82%), Postives = 142/220 (64.55%), Query Frame = 3
Query:   63 LLVLFLFFQISVSEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDRE 710
            LL      +++++ ++F+E F DG  WR+RWV S    ++ + G+F+ ++GK++G  + DKG+QT  ++R YAISA    FSNK +TLV+QY+++ EQ ++CGG YIK+  + ++QKK  G + Y +MFGPDICG   K +HVIL ++ Q +  KK + C+ D  TH YT ILRPD SY + +D +  +SGS+  DW++   RK +  +     DWD  E
Sbjct:    7 LLWAICVLRVALATVYFQEEFLDGERWRNRWVQST---NDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPSDLDQKKMNGKSQYYIMFGPDICGFDIKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQSIESGSIEYDWNLTSLRKTEKTSLDS-RDWDQVE 222          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.272e-45
Identity = 87/209 (41.63%), Postives = 139/209 (66.51%), Query Frame = 3
Query:   87 QISVSEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWD 701
            +++++ ++F+E F DG  WR+RWV S    ++ + G+F+ ++G ++G  + DKG+QT  ++R YAISA+   FSNK +TL++QY+++ EQ ++CGG YIKL  A V+QK   G + Y +MFGPDICG   K +HVIL ++ Q +  KK + C+ D  TH YT +LRPD +Y + ID +  +SGS+  DW +   +K++  +A+    WD
Sbjct:   15 RVALATVYFQEEFLDGERWRNRWVHST---NDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARFKPFSNKGKTLIIQYTVKHEQKMDCGGGYIKLFPADVDQKNLNGKSQYYIMFGPDICGFDIKTVHVILHFKNQYHANKKSIRCKVDSFTHLYTLVLRPDLTYEVKIDGQSIESGSIEYDWQLTSLKKMEKASAEAEG-WD 219          
The following BLAST results are available for this feature:
BLAST of FC930667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CALR_CERAE1.278e-5747.60Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_BOVIN2.179e-5748.02Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_ONCVO3.479e-5546.49Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_DROME3.847e-5446.22Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_CAEEL8.570e-5447.35Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_CAEBR8.570e-5447.35Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_SCHMA3.257e-5344.98Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_EUGGR5.199e-5147.98Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR3_MOUSE1.465e-4541.82Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]
CALR3_BOVIN7.272e-4541.63Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010A03EF PostHarvC1 Citrus clementina cDNA clone C34010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930667 ID=FC930667; Name=FC930667; organism=Citrus clementina; type=EST; length=730bp
AGATAATTGGAGTGAGATTCTTAAAACTACAAGCCACAAGGATCCTAAAG
ATGATGATTAAGCTGCTTGTACTTTTCCTTTTCTTTCAAATTTCAGTTTC
TGAGATCTTTTTTGAAGAGCGATTTGACGATGGATGGCGAAGTCGTTGGG
TAATATCAGACTGGAAACGAAGTGAAGGGAAAGCTGGATATTTTAAGCAC
ACAGCTGGAAAGTGGCATGGTGACCCGGATGATAAAGGTATTCAAACTCA
CACCGATGCAAGACACTATGCCATATCTGCAAAAATACCAGAATTTAGCA
ACAAAAACAGAACATTGGTTGTTCAGTATTCTATACGATTTGAGCAAGAC
ATTGAATGTGGTGGATACATAAAACTTCTTTCTGCATATGTCAATCAAAA
GAAATTTGGCGGAGATGCTCCCTACAGTTTAATGTTTGGACCAGATATAT
GTGGCACGCAAAAGAAGCATCTCCATGTTATCCTCTCCTACCAGGGTCAG
AATTACCCCATCAAAAAGGAGCTGGAATGTGAAACAGACAAGTTGACTCA
TTTCTACACATTTATTCTCAGGCCTGATGCCAGTTATAGTATCCTCATTG
ATAACCGAGAGAGGGATTCTGGTAGCATGTACACGGATTGGGATATTCTT
CCTCCACGGAAAATCAAAGCTGTCAATGCCAAAAAGCCAGCGGATTGGGA
TGATAGAGAATATATTGATGATCCTAATGC
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