FC930667

Overview
NameFC930667
Unique NameFC930667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.371e-43
Identity = 86/209 (41.15%), Postives = 138/209 (66.03%), Query Frame = 3
Query:   87 QISVSEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWD 701
            +++++ ++F+E F DG  WR+RW+ S    ++ + G+F+ ++GK++G  + DKG+QT  + R YAISA+   FSNK +TLV+QY+++ EQ ++CGG YIK+  A ++QK   G + Y +MFGPDICG   K +HVIL ++ + +  KK + C+ D  TH YT ILRPD SY + ID +  +SGS+  DW++   +  K  +  +  DW+
Sbjct:   15 RVALATVYFQEEFLDGEHWRNRWLQST---NDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIESGSIEYDWNLTSLK--KETSPAESKDWE 218          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.195e-33
Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 3
Query:   90 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLS--AYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDPN 728
            +   E++F + FD G  S W++S  K+ +      K+  GKW  D       P DKG+   + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS  + +N  +F    PY++MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP+
Sbjct:   65 VPTGEVYFADSFDRGSLSGWILSKAKKDDTDDEIAKYD-GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTSELNLDQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIADPD 298          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_PONAB (Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.195e-33
Identity = 88/235 (37.45%), Postives = 126/235 (53.62%), Query Frame = 3
Query:   90 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDP 725
            +   E++F + FD G  S W++S  K+ +      K+  GKW  D       P DKG+   + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY++MFGPD CG   K LH I  ++     I +E   +          TDK TH YT IL PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP
Sbjct:   64 VPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYD-GKWEVDEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDP 296          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.743e-33
Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 3
Query:   90 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLS--AYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDPN 728
            +   E++F + FD G  S W++S  K+ +      K+  GKW  D       P DKG+   + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS  A ++  +F    PY++MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP+
Sbjct:   65 VPTGEVYFADSFDRGSLSGWILSKAKKDDTDDEIAKYD-GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTAELSLDQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIADPD 298          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_CANFA (Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.743e-33
Identity = 87/236 (36.86%), Postives = 127/236 (53.81%), Query Frame = 3
Query:   90 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDPN 728
            +   E++F + FD G  S W++S  K+ +      K+  GKW  D       P DKG+   + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY++MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP+
Sbjct:   65 VPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYD-GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPD 298          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 87/235 (37.02%), Postives = 126/235 (53.62%), Query Frame = 3
Query:   90 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDP 725
            +   E++F + FD G  S W++S  K+ +      K+  GKW  +       P DKG+   + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY++MFGPD CG   K LH I  ++     I +E   +          TDK TH YT IL PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP
Sbjct:   64 VPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYD-GKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDP 296          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31
Identity = 90/254 (35.43%), Postives = 127/254 (50.00%), Query Frame = 3
Query:   45 LKMMIKLLVLFLFFQISVS-----------EIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVN---QKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPP----RKIKAVNAKKPADWDDREYIDDPN 728
            + M + LL + LFF  S S           +  F E FD+ +  RW++SD    E   G +KH     H   DD G+     AR YAI  ++ E  S K+ T+V+Q+  R +  +ECGG YIK L    +    K+F  ++PYS+MFGPD CG   K +H I  ++         + +K      +DKLTH YT IL+PD    ILID  E+   +  +  D  PP    + I   + KKP DWD+R  I DP+
Sbjct:    7 IPMALGLLAMILFFIASSSSHLVRASDDADDAIFYESFDEDFDGRWIVSD---KEDYNGVWKHAKSDGH---DDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQESGWKPKEFDNESPYSIMFGPDKCGATNK-VHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKKKANFLSSEDFEPPLIPSKTIPDPDDKKPEDWDERAKIPDPS 253          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 76/224 (33.93%), Postives = 117/224 (52.23%), Query Frame = 3
Query:   99 SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG----YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD----ILPPRKIKAVNAKKPADWDDREYIDDP 725
            S+  F E FD+ +   W++S+    E   G +KH+  + H   DD G+     AR YAI  ++ +    K+ T+V+QY +R +  +ECGG    Y++   A    K F  ++PYS+MFGPD CG   K +H IL ++         + +K      +DKLTH YT +++PD    ILID  E+   +  +  D    ++P + I   + KKP DWD+R  I DP
Sbjct:   31 SDAIFYESFDESFEGSWIVSE---KEDYPGEWKHSKSEGH---DDYGLLVSDKARKYAIVKELEKPVELKDGTIVLQYEVRLQNGLECGGAYLKYLRPQDAGWTAKGFDNESPYSIMFGPDKCGATNK-VHFILKHKNPKSGDYVEHHLKFPPSVPSDKLTHVYTAVIKPDNELVILIDGEEKKKANFLSSEDFEPALIPTKTIPDPDDKKPEDWDERAKIPDP 247          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_ASPFU (Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_4G12850 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 83/234 (35.47%), Postives = 119/234 (50.85%), Query Frame = 3
Query:   84 FQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKW--------HGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLL--SAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELE------CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDP 725
            F  +  E  F E+F   W SRW  S  K+ + K+       G+W        +G   DKG+     A H+AISAK P+   NK +TLVVQY ++ +  + CGG Y+KLL  +  ++ ++F    PY +MFGPD CG   K +H I  ++       +E          T KLT  YT I++PD S+ ILID     +G++  D+   + P ++I     KKPADW D   I DP
Sbjct:   41 FTPTTIEAPFLEQFTADWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAAHHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVIMFGPDKCGATNK-VHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQILIDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDP 273          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 82/248 (33.06%), Postives = 126/248 (50.81%), Query Frame = 3
Query:   39 RILKMMIKLLVLFLFFQ---ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSN-KNRTLVVQYSIRFEQDIECGG----YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD----ILPPRKIKAVNAKKPADWDDREYIDDPN 728
            R L  +  LL+ F+ FQ       +    E FD+ +  RW++S   ++    G +KH   + H   +D G+     AR Y I  ++ E  N K  T+V+QY +RF++ +ECGG    Y++   A    + F  ++PYS+MFGPD CG   K +H IL ++         + +K       DKL+H YT IL+PD    IL+D  E+   ++ +  D    ++P + I     KKP DWD+R  I DPN
Sbjct:    4 RQLFSVFLLLLAFVSFQKLCYCDDQTVLYESFDEPFDGRWIVS---KNSDYEGVWKHAKSEGH---EDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGGTNK-VHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPN 244          
The following BLAST results are available for this feature:
BLAST of FC930667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CALR3_HUMAN1.371e-4341.15Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]
CALX_RAT2.195e-3336.86Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]
CALX_PONAB2.195e-3337.45Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2[more]
CALX_MOUSE3.743e-3336.86Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CALX_CANFA3.743e-3336.86Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3[more]
CALX_HUMAN6.385e-3337.02Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CALX_SOYBN5.976e-3135.43Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX_HELTU7.305e-2933.93Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX_ASPFU1.627e-2835.47Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_... [more]
CALX1_ARATH2.776e-2833.06Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010A03EF PostHarvC1 Citrus clementina cDNA clone C34010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930667 ID=FC930667; Name=FC930667; organism=Citrus clementina; type=EST; length=730bp
AGATAATTGGAGTGAGATTCTTAAAACTACAAGCCACAAGGATCCTAAAG
ATGATGATTAAGCTGCTTGTACTTTTCCTTTTCTTTCAAATTTCAGTTTC
TGAGATCTTTTTTGAAGAGCGATTTGACGATGGATGGCGAAGTCGTTGGG
TAATATCAGACTGGAAACGAAGTGAAGGGAAAGCTGGATATTTTAAGCAC
ACAGCTGGAAAGTGGCATGGTGACCCGGATGATAAAGGTATTCAAACTCA
CACCGATGCAAGACACTATGCCATATCTGCAAAAATACCAGAATTTAGCA
ACAAAAACAGAACATTGGTTGTTCAGTATTCTATACGATTTGAGCAAGAC
ATTGAATGTGGTGGATACATAAAACTTCTTTCTGCATATGTCAATCAAAA
GAAATTTGGCGGAGATGCTCCCTACAGTTTAATGTTTGGACCAGATATAT
GTGGCACGCAAAAGAAGCATCTCCATGTTATCCTCTCCTACCAGGGTCAG
AATTACCCCATCAAAAAGGAGCTGGAATGTGAAACAGACAAGTTGACTCA
TTTCTACACATTTATTCTCAGGCCTGATGCCAGTTATAGTATCCTCATTG
ATAACCGAGAGAGGGATTCTGGTAGCATGTACACGGATTGGGATATTCTT
CCTCCACGGAAAATCAAAGCTGTCAATGCCAAAAAGCCAGCGGATTGGGA
TGATAGAGAATATATTGATGATCCTAATGC
back to top