FC930667

Overview
NameFC930667
Unique NameFC930667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 77/233 (33.05%), Postives = 126/233 (54.08%), Query Frame = 3
Query:   96 VSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLS--AYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDP 725
            + E++F E FD G  + WV+S  K+ +  +    +  G+W  +       P D+G+   + A+H+AI+A + + F   ++ L+VQY + F+  I+CGG YIKLL+    +  + F     Y++MFGPD CG   K LH+I  ++     + +E   +          TD+ TH YT ++ PD ++ +LID +  + G++  D    I PPR+I   + KKP +WDDR  I DP
Sbjct:   57 IGEVYFTETFDSGNLAGWVLSKAKKDDMDSEIAIYD-GRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTGDLILENFYDKTSYTIMFGPDKCGEDYK-LHLIFRHKHPKTGVFEEKHAKPPDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLLDDVVPPINPPREIDDPSDKKPEEWDDRAKIPDP 287          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 80/232 (34.48%), Postives = 124/232 (53.45%), Query Frame = 3
Query:   96 VSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDD 722
            V E++F E FD G  + WV+S  K+ +  A    +  G+W  +       P D+G+   + A+H+AISA + + F   ++ LVVQY + F+  I+CGG YIKLL+    +N + F     Y++MFGPD CG   K LH I  ++     + +E   +          TD+ TH YT ++ PD ++ +LID    + GS+  D    I PP++I+    +KP DWD+R  I D
Sbjct:   53 VGEVYFTETFDSGRLAGWVLSKAKKDDIDAEISIYD-GRWEIEELKENRIPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLVVQYEVNFQDGIDCGGAYIKLLADTDGLNLENFYDKTSYTIMFGPDKCGEDYK-LHFIFRHKHPKTGVFEEKHAKPPDVDLKRFFTDRKTHLYTLVMNPDDTFEVLIDQIVVNKGSLLEDVVPPINPPKEIEDPTDEKPDDWDERAKIPD 282          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.799e-27
Identity = 77/234 (32.91%), Postives = 124/234 (52.99%), Query Frame = 3
Query:   96 VSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQ--KKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDPN 728
            + E++F E FD G  + WV+S  K+ +       +  G+W  +       P D+G+   + A+H+AISA + + F   ++ L+VQY + F+  I+CGG YIKLL+   +   + F     Y +MFGPD CG   K LH I  ++     + +E   +          TD+ TH YT ++ PD ++ +L+D    + GS+  D    I PP++I+  N KKP +WD+R  I DP+
Sbjct:   57 IGEVYFAETFDSGRLAGWVLSKAKKDDMDEEISIYD-GRWEIEELKENQVPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTDDLILENFYDKTSYIIMFGPDKCGEDYK-LHFIFRHKHPKTGVFEEKHAKPPDVDLKKFFTDRKTHLYTLVMNPDDTFEVLVDQTVVNKGSLLEDVVPPIKPPKEIEDPNDKKPEEWDERAKIPDPS 288          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26
Identity = 89/252 (35.32%), Postives = 128/252 (50.79%), Query Frame = 3
Query:   39 RILKMMIKLLVLFLFFQISVS----EIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAK--IPEFSNKNR-TLVVQYSIRFEQDIECGG-YIKLL----SAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPP----RKIKAVNAKKPADWDDREYIDDPN 728
            RI+  +  LLV  L F  SVS    +    E FD+ +  RWV+S+    +G    +KH   + H   DD G+     A+ Y I  +  + E  N N  T+V+QY  RF++ +ECGG Y+K L    + +V Q  F  D+PYS+MFGPD CG   K +H IL ++         + +K       D L+H YT +L+ D    IL+D  E+  G++ +  D  PP    + I     KKP DWD+R  I DPN
Sbjct:    4 RIITFVSLLLVALLSFP-SVSYCDDQTILYESFDEPFDGRWVVSEKAEYQG---VWKHEKSEGH---DDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQG-FDNDSPYSIMFGPDKCGATNK-VHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKIPDPN 246          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 83/254 (32.68%), Postives = 126/254 (49.61%), Query Frame = 3
Query:   45 LKMMIKLLVLFLFFQIS------------VSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVN---QKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD----ILPPRKIKAVNAKKPADWDDREYIDDP 725
            + + + LL + LFF  S            V +  F E FD+ + +RW++S     E   G +KH+  + H   DD G+     AR YAI  ++    S K+ T+V+Q+  R +  +ECGG YIK L    +    K F  ++ YS+MFGPD CG   K +H I  ++         + +K      +DKL+H YT +L+ D   SILID  E+   +  +  D    ++P + I   + KKP DWD+R  I DP
Sbjct:    7 IPLAMGLLAVLLFFVASSSSFHLVRASDEVDDAIFYESFDEDFDNRWIVSG---KEEYNGVWKHSKSEGH---DDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLECGGAYIKYLQTQESGWKPKGFDNESGYSIMFGPDRCGATNK-VHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKKKANFLSSEDFEPALIPSKTIPDPDDKKPEDWDERAKIPDP 253          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 75/215 (34.88%), Postives = 109/215 (50.70%), Query Frame = 3
Query:  147 WVISDWKRSEGKAGYFKHTAGKWH-GDPD------DKGIQTHTDARHYAISAKI-PEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLS--AYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ----------NYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDD 722
            W+ S  K+ +  +   K+  G+W  G P       D G+   T ARH+AI+AK+   F+    T VVQY I+FE+  ECGG Y+KLLS  A  +   F     Y++MFGPD CG   K +H+I  Y+            N P         D  TH +T +++P   YS+ +D +    G+M +D    + PP++I      KP DWD+RE I+D
Sbjct:   75 WIKSLAKKDDVDSDIAKYN-GEWSIGAPTKVSIEGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCGATGK-VHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENIED 287          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 66/222 (29.73%), Postives = 102/222 (45.95%), Query Frame = 3
Query:  117 ERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD--------DKGIQTHTDARHYAISAKIPEFSNK-NRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQK------KHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDPN 728
            E+F   W  RW+ S  KR         +  G+W  +          + G+    +A H+AIS +  E  N+  + LVVQY +  E+ + CGG Y+KLL A     +      Y +MFGPD CG         KH + +     + +   +        +T+ YT I++PD ++ + I+      GS++ D+   +LPP +I      KPADW D   I DPN
Sbjct:   44 EQFQGAWSERWIPSHAKRFVNGIEEMSYV-GEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGVNDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPN 263          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_PIG (Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  105 IFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIEC 359
            I+F+E+F   DGW  RW+ S  K   G+   F  ++GK++GD + DKG+QT  DAR YA+SA+   FSNK +TLVVQ++++ EQ+I+C
Sbjct:   21 IYFKEQFLDGDGWTDRWIESKHKPDFGR---FVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDC 105          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALX_YEAST (Calnexin homolog OS=Saccharomyces cerevisiae GN=CNE1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 72/247 (29.15%), Postives = 110/247 (44.53%), Query Frame = 3
Query:   78 LFFQISVSEIFFEERFDDGWRSR-----WVISDWKRSEGKAGY---FKHTAGKWHGDPDDKGIQTHTDARHYAIS--AKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAP----YSLMFGPDICGTQKKHLHVILSYQGQ---NYPIKKELECETDKLT-----HFYTFILRPDA-SYSILIDNRE-------RDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            L   ++++E  F E F     ++     W+ S+   +EG   Y   ++ + G+  G   DKGI   T      I    + P   ++  TLVVQY I+ +  + CGG +IKL+S ++N +     AP      L+FGPD C  +   +   ++   +      ++   E    KLT     H YT I+   A S+ ILID +         D   +  +  I PP  I  V+  KP DWDDR  I DP
Sbjct:   22 LLSNVTLAEDSFWEHFQAYTNTKHLNQEWITSEAVNNEGSKIYGAQWRLSQGRLQGSAWDKGIAVRTGNAAAMIGHLLETPINVSETDTLVVQYEIKLDNSLTCGGAFIKLMSGFMNVEALKHYAPDTEGVELVFGPDYCAPEINGVQFAINKVDKITHESKLRYLQEMPLSKLTDTSQSHLYTLIIDESAQSFQILIDGKTVMVREHIEDKKKVNFEPPITPPLMIPDVSVAKPHDWDDRIRIPDP 268          
The following BLAST results are available for this feature:
BLAST of FC930667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CLGN_MOUSE6.184e-2833.05Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_BOVIN1.378e-2734.48Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CLGN_HUMAN1.799e-2732.91Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CALX2_ARATH1.166e-2635.32Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_PEA1.523e-2632.68Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX_CAEEL1.743e-2234.88Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALX_SCHPO4.018e-1929.73Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALR_PIG2.064e-1547.73Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1... [more]
CALX_YEAST4.597e-1529.15Calnexin homolog OS=Saccharomyces cerevisiae GN=CN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010A03EF PostHarvC1 Citrus clementina cDNA clone C34010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930667 ID=FC930667; Name=FC930667; organism=Citrus clementina; type=EST; length=730bp
AGATAATTGGAGTGAGATTCTTAAAACTACAAGCCACAAGGATCCTAAAG
ATGATGATTAAGCTGCTTGTACTTTTCCTTTTCTTTCAAATTTCAGTTTC
TGAGATCTTTTTTGAAGAGCGATTTGACGATGGATGGCGAAGTCGTTGGG
TAATATCAGACTGGAAACGAAGTGAAGGGAAAGCTGGATATTTTAAGCAC
ACAGCTGGAAAGTGGCATGGTGACCCGGATGATAAAGGTATTCAAACTCA
CACCGATGCAAGACACTATGCCATATCTGCAAAAATACCAGAATTTAGCA
ACAAAAACAGAACATTGGTTGTTCAGTATTCTATACGATTTGAGCAAGAC
ATTGAATGTGGTGGATACATAAAACTTCTTTCTGCATATGTCAATCAAAA
GAAATTTGGCGGAGATGCTCCCTACAGTTTAATGTTTGGACCAGATATAT
GTGGCACGCAAAAGAAGCATCTCCATGTTATCCTCTCCTACCAGGGTCAG
AATTACCCCATCAAAAAGGAGCTGGAATGTGAAACAGACAAGTTGACTCA
TTTCTACACATTTATTCTCAGGCCTGATGCCAGTTATAGTATCCTCATTG
ATAACCGAGAGAGGGATTCTGGTAGCATGTACACGGATTGGGATATTCTT
CCTCCACGGAAAATCAAAGCTGTCAATGCCAAAAAGCCAGCGGATTGGGA
TGATAGAGAATATATTGATGATCCTAATGC
back to top