FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            V VA DG+G Y+TV EA+   P  +  R +IRI  GVYR+ V VPK K  I   G    +T++T +               G+ TF   +V   G  F+A +ITF+N+A     QAVA+RV +D  AFY C  L +QD+LY+H  +Q+
Sbjct:    9 VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQD----------GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQF 146          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 60/146 (41.10%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            VA DG+G+++TV  A+   P   T R +IRI  GVYR+ V V K    I   G     T++T +             V G+ TF   +  V GE F+A +ITF+N+A     QAVA+RV AD  AFYNC  L +QDTLY+H  +Q+
Sbjct:  276 VAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV----------VDGSTTFKSATAAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQF 411          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G ++T+ EA+   P  N  R +I I  GVY++ V +PK  N + + G     T++T++ +             GT T   G+V VE E F+A+ I F+N+A     QAVA RV  DR   +NCRF G+QDTLY++ G+Q+ +
Sbjct:  262 VAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSP--------GTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYR 401          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSG-----QAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V Q+G GH++T+ EAI+ V   NT R +I+I PGVY++ V + ++K  ITL G      VLT++ TA +            GT    ++IV  + F+A NI  +NSAP   G     QA+++R++ ++ AFYNC+F G+QDT+    G  + K
Sbjct:   45 VKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQY-----------GTVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFK 186          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 59/150 (39.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VA DG+G Y+T+ EA++ VP  N    +I I  GVY + V V K    +T  G  P         T TKI       +    T+   +V + G++F A+NI FEN+A     QAVA+RV+AD   FYNC+  G+QDTLY+H  +Q+ +
Sbjct:  260 VVVAHDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYNEKVDVTKKMTHVTFIGDGP---------TKTKITGSLNYYIGKVKTYLTATVAINGDNFTAKNIGFENTAGPEGHQAVALRVSADLAVFYNCQIDGYQDTLYVHSHRQFFR 400          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.389e-21
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  249 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSA----PEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            ++TV Q G  +++T+ EAI  +P  N  R +I+++PGVY + V +   +  ITL G+    TVLT++ TA +            GT    ++IV  E F A ++T +N+A    P   GQA+A+R+ AD+ AFY+CRF G+QDTL    G  + K
Sbjct:   66 IITVNQKGGANFKTLNEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFITLLGQPGAETVLTYHGTAAQY-----------GTVESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFK 209          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G ++T+ EA+   P  N  R +I I  GVY++ V +PK  N + + G     T++T++ +             GT T   G+V VE E F+A+ I F+N+A     QAVA RV  DR   +NCRF G+QDTLY++ G+Q+ +
Sbjct:  275 VAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSP--------GTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYR 414          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  240 ASCVVTVAQDGTGHYRTVQEAID---RVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            A   + VA+DG+GHY ++Q+A++   ++P  N  R +I +  GVYR+ V + K+   + + G   ++T++T N               GT TF   +  V G  F+A+ ITFEN+A     QAVA+R ++D   FY C F G+QDTLYLH  +Q+L+
Sbjct:  247 AKADLVVAKDGSGHYTSIQQAVNAAAKLPRRNQ-RLVIYVKAGVYRENVVIKKSIKNVMVIGDGIDSTIVTGNRNVQD----------GTTTFRSATFAVSGNGFIAQGITFENTAGPEKHQAVALRSSSDFSVFYACSFKGYQDTLYLHSSRQFLR 392          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VA+DG+G  +T+ +A+  VP+ NT + +I I  GVY++ V V K    +   G  P  TV+T +      +          GT+   SV V G+ F+A++I FEN+A     QAVA+RV+AD   F+NC   G+QDTLY+H  +Q+ +
Sbjct:  392 VVVAKDGSGKCKTIAQALAMVPMKNTKKFVIHIKEGVYKEKVEVTKKMLHVMFVGDGPTKTVITGDIAFLPDQ---------VGTYRTASVAVNGDYFMAKDIGFENTAGAARHQAVALRVSADFAVFFNCHMNGYQDTLYVHTHRQFYR 532          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAP-----EGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V ++G  ++ TVQ A+D V   +  R +I I+ G+Y + V +PKTK  ITL G+  + T + WN+TA              GTF C +V V G  FVA+NI+F N AP     +   QAVAIR+  D  AF  C F G QDTL+   G+ Y K
Sbjct:   93 VDKNGCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTAYS----------ANGTFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFK 235          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME_DAUCA6.235e-2239.86Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME1_CITSI8.143e-2241.10Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME_BRACM1.064e-2138.51Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME63_ARATH1.064e-2137.91Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PME58_ARATH1.064e-2139.33Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME50_ARATH1.389e-2137.42Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME_BRANA1.814e-2138.51Probable pectinesterase/pectinesterase inhibitor O... [more]
PME6_ARATH1.814e-2136.94Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME43_ARATH3.094e-2138.00Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME8_ARATH4.041e-2140.52Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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