FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            V VA DG+G Y+TV EA+ + P  ++ R +IRI  GVYR+ V VPK K  I   G    NT++T +               G+ TF   +V+      +A +ITF+N+A     QAVA+ V +D  AFY C  L +QDTLY+H  +Q+
Sbjct:  273 VVVAADGSGDYKTVSEAVRKAPEKSSKRYVIRIKAGVYRENVDVPKKKTNIMFMGDGKSNTIITASRNVQD----------GSTTFHSATVVRVAGKVLARDITFQNTAGASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQF 410          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 TVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            TVA DG+G ++TV  A+   P  +  R +I I  GVYR+ V V K K  I   G     T++T +             V G+ TF   +V   GE F+A +ITF+N+A     QAVA+RV +D  AFYNC  L +QDTLY+H  +Q+
Sbjct:  283 TVAADGSGTFKTVAAAVAAAPENSNKRYVIHIKAGVYRENVEVAKKKKNIMFMGDGRTRTIITGSRNV----------VDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQF 419          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTG---TFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VAQDGTG ++T+ +A++ VP  N    +I I  G+Y++ V V K    +T  G  P  T++T +               G G   TF   ++ +EG+ F A+NI  EN+A    GQAVA+RV+AD   F++C+  G QDTLY+H  +Q+ +
Sbjct:  260 VAQDGTGQFKTITDALNAVPKGNKVPFIIHIKEGIYKEKVTVTKKMPHVTFIGDGPNKTLITGSLN------------FGIGKVKTFLTATITIEGDHFTAKNIGIENTAGPEGGQAVALRVSADYAVFHSCQIDGHQDTLYVHSHRQFYR 398          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 68/195 (34.87%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  132 YTFLFKFIFGCVISQQSIPSPPARCGCVSFFLVLKMASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGS-----GQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            +  LF  I   + S       P++C  +S F   K  + V+ V+ +G G ++ VQ+AID     +  +TLI I  G+YR+   V + KN + + G     T + WNNT               GTF   SV V GE F A NI+F+N+AP  +      QAVA++V  D+ AFY C F G QDTL    G+ + K
Sbjct:    3 FFILFLSIISPIESVDQRIHHPSKCDHLSKFPT-KGFTMVLKVSLNGCGRFKRVQDAIDASIGSSQSKTLILIDFGIYRERFIVHENKNNLVVQGMGYSRTSIEWNNTTAS----------SNGTFSSFSVAVFGEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFK 186          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  255 TVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            TVA+DG+G++ T+  A+  +P     R  I I  G+Y + V + K K  +T+ G   + T++T N +     H +  R   T TF     + +GE F+A+++ F N+A     QAVAIRV +DR  F NCRF G+QDTLY +  +QY +
Sbjct:  298 TVAKDGSGNFTTINAALKAMPAKYQGRYTIYIKHGIYDESVIIDKKKPNVTMVGDGSQKTIVTGNKS-----HAKKIRTFLTATF-----VAQGEGFMAQSMGFRNTAGPEGHQAVAIRVQSDRSVFLNCRFEGYQDTLYAYTHRQYYR 436          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  249 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSA----PEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V+ V Q+G G ++T+  AI  +PL N  R +I+++PG+Y + V V   +  +TL G+    T LT+  TA K            GT    ++IV   +F+A N+   N++    P   GQA+A+R+  D+ AFYNCRF G+QDTL    G  + K
Sbjct:   66 VIIVNQNGGGDFKTINAAIKSIPLANKNRVIIKLAPGIYHEKVTVDVGRPYVTLLGKPGAETNLTYAGTAAKY-----------GTVESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFK 209          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA DG G YRT+ EAI+  P  +T R +I +  GVY++ + + K K  I L G     T++T +    +          G  TF   +V V G  F+A++ITF N+A   + QAVA+RV +D+ AFY C   G+QDTLY H  +Q+ +
Sbjct:  243 VAIDGKGKYRTINEAINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITGDRNFMQ----------GLTTFRTATVAVSGRGFIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYR 380          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  255 TVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            TVA+DG+G + T+ +A+  +P     R +I +  G+Y + V V K K  +T+ G   + T++T N +     H +  R   T TF     + +GE F+A+++ F N+A     QAVAIRV +DR  F NCRF G+QDTLY +  +QY +
Sbjct:  303 TVAKDGSGDFTTINDALRAMPEKYEGRYIIYVKQGIYDEYVTVDKKKANLTMVGDGSQKTIVTGNKS-----HAKKIRTFLTATF-----VAQGEGFMAQSMGFRNTAGSEGHQAVAIRVQSDRSIFLNCRFEGYQDTLYAYTHRQYYR 441          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  243 SCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAP-----EGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            S V+TV   G G++  VQ AID VP  ++ +TLI ++ G YR+ V V + K  + + GR  +NT + WN+TA               T    S +V   +F A NI+F+N+AP     E   QAVA+R+  D+ AFY C F G QDTL    G+ + K
Sbjct:   88 SLVLTVDLHGCGNFSNVQSAIDVVPDLSSSKTLIIVNSGSYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKS----------AGNTADSFSFVVFAANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFK 235          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            ++VA DGTG++ T+ +A+   P  +  R +I I  G Y + V +PK K +I   G     TV+  N +          R+ G  TF   +V V+G+ ++A++I+F NSA     QAVA R  +D  AFY C F G+QDTLY+H  KQ+ +
Sbjct:  222 LSVAIDGTGNFTTINDAVFAAPNMSETRFIIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRS----------RIDGWSTFQTPTVGVKGKGYIAKDISFVNSAGPAKAQAVAFRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYR 361          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PMEU1_SOLLC6.894e-2139.19Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_ARATH6.894e-2140.14Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME23_ARATH6.894e-2137.09Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME14_ARATH6.894e-2134.87Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME45_ARATH9.003e-2137.58Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME49_ARATH1.176e-2036.13Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME22_ARATH1.536e-2038.51Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME13_ARATH1.536e-2037.58Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME15_ARATH2.006e-2037.97Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME39_ARATH3.421e-2037.33Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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