FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 58/156 (37.18%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  249 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPE-----GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V+TV+ +G   +R+VQ+A+D +P  N     I+I+PG YR+ V VP TK  IT  G   + T + W++ A+ +     A      T+   SV V    F A NI+F N+AP         QAVA R++ D+  F  C F G QDTL    G+ Y K
Sbjct:   60 VITVSLNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDL----GANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFK 211          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 57/147 (38.78%), Postives = 78/147 (53.06%), Query Frame = 3
Query:  255 TVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            TVA DG+G + TV  A+   P  +  R +I I  GVYR+ V V K K  I   G     T++T +             V G+ TF   +V   GE F+A +ITF+N+A     QAVA+RV +D  AFY C    +QDTLY+H  +Q+
Sbjct:  278 TVADDGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKTNIMFLGDGRGKTIITGSRNV----------VDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQF 414          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  249 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGR--CPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENS----APEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            V+ V ++G G   TVQ A+D VP  N+ R  I I PG+YR+ V VPK+K  I+  G      +TV++W++ A+ +           GT+   SV +E + F A  ITFEN+    A E   QAVA+R+  D+  FY  R LG QDTL+   G  Y
Sbjct:   81 VIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDL----GCDGKELGTYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHY 231          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 51/150 (34.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VA+DGTG ++TV EA+   P  +  R +I +  GVY++ + + K K  + L G   + T++T +             + G+ TF   +V   G+ F+A++I F+N+A     QAVA+RV+AD+     CR   +QDTLY H  +Q+ +
Sbjct:  247 VVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNV----------IDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYR 386          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVP--LCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VAQDG+G Y+T+QEA++     L  + R +I +  GVY + V V    N I + G     T++T + +  +          G  T+   + + EG+ FV  +IT  N+A   + QAVA+R  +D   FY C   G+QDTLY+H G+Q+ +
Sbjct:  165 VVVAQDGSGDYKTIQEAVNGAGERLKGSPRYVIHVKQGVYEEYVNVGIKSNNIMITGDGIGKTIITGDKSKGR----------GFSTYKSATFVAEGDGFVGRDITIRNTAGPENHQAVALRSNSDMSVFYRCSIEGYQDTLYVHSGRQFFR 306          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VA+DGTG Y TV  AI   P  +  R +I I  G+Y + V +  TK  +TL G   + T++T N +A+ +            TF   +V   G  F+  ++ F N+A    G AVA+RV+ D    Y CR  G+QD LY H  +Q+ +
Sbjct:  216 VVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITSNLSASNVRR----------TFNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYR 355          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 56/172 (32.56%), Postives = 92/172 (53.49%), Query Frame = 3
Query:  201 RCGCVSFFLVLKMASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSG-----QAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            R G     +  + A  ++ V   G G ++T+ +AI  VP  NT R +I+++PG Y++ V + + K  ITL G+     V+T++ TA K            GT    S+I+  + F+A NI  +N+AP   G     QA+++R++ +  AFYNC+F G+QDT+    G  + K
Sbjct:   50 RKGLDPALVAAEAAPRIINVNPKG-GEFKTLTDAIKSVPAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAKY-----------GTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFK 209          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  243 SCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRT---LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            S +VTV Q+GTG++ T+  AI   P          LI ++ G+Y + V VPK K  + + G     TV+T N +           V G  TF   + I+ G +F+  NIT  N+A    GQAVA+R   D   FY+C F  +QDTLY H  +Q+ +
Sbjct:  243 SDIVTVIQNGTGNFTTINAAIAAAPNKTDGSNGYFLIYVTAGLYEEYVEVPKNKRYVMMIGDGINQTVITGNRSV----------VDGWTTFNSATFILSGPNFIGVNITIRNTAGPTKGQAVALRSGGDLSVFYSCSFEAYQDTLYTHSLRQFYR 388          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VA+DGTG Y TV  AI   P  +  R +I I  G+Y + V +  TK  +TL G   + T++T N +A+ +            T+   +V   G  F+  ++ F N+A    G AVA+RV+ D    Y CR  G+QD LY H  +Q+ +
Sbjct:  189 VVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITGNLSASNVRR----------TYNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYR 328          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V VA+DGTG Y TV  AI   P  +  R +I I  G+Y + V +  TK  +TL G   ++T++T N +A+ +      R   T TF        G+ F+  ++ F N+     G AVA+RV+ D    Y CR  G+QD LY H  +Q+ +
Sbjct:  216 VVVAKDGTGKYNTVNAAIAAAPQHSHKRFIIYIKTGIYDEIVAIENTKPNLTLIGDGQDSTIITGNLSASNVR-----RTFYTATFAS-----NGKGFIGVDMCFRNTVGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHIDRQFYR 355          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME68_ARATH1.698e-1937.18Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME2_ARATH1.698e-1938.78Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME62_ARATH4.940e-1939.35Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME18_ARATH1.101e-1834.00Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME38_ARATH1.877e-1834.87Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME19_ARATH1.877e-1835.33Probable pectinesterase/pectinesterase inhibitor 1... [more]
PPME1_ARATH2.452e-1832.56Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME20_ARATH2.452e-1835.90Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME30_ARATH3.202e-1834.67Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME42_ARATH4.182e-1835.33Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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