FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTG--TFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VA DGTG++ T+ EAI   P  +  R LI +  GVY + + +P  K  I L G   + T +T N            R +G G  TF   ++ V GE F+A +I   N+A     QAVA+RV AD  A Y C   G+QDTLY H  +Q+ +
Sbjct:  238 LVVAADGTGNFSTINEAISFAPNMSNDRVLIYVKEGVYDENIDIPIYKTNIVLIGDGSDVTFITGN------------RSVGDGWTTFRSATLAVSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYR 377          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA DGTG++ T+ +A+   P  +T R +I +  GVY + V + K K  I + G   + TV+T N +           + G  TF   +  V G  F+A +ITF+N+A     QAVAIR   D   FY C   G+QDTLY H  +Q+ +
Sbjct:  217 VAADGTGNFTTISDAVLAAPDYSTKRYVIHVKRGVYVENVEIKKKKWNIMMVGDGIDATVITGNRSF----------IDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFR 354          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 58/151 (38.41%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRT-LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VTV +DG   Y+TVQ+A++  P  N  R  +I+IS GVY + V VP  K  +   G     TV+T +  A          + G  T+   +V V G+ F+A ++TF+N+A   + QAVA R  +D     NC FLG QDTLY H  +Q+ K
Sbjct:  241 VTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENVIVPFEKKNVVFIGDGMGKTVITGSLNAG---------MPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYK 382          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  201 RCGCVSFFLVLKMASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSG-----QAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            R G     +  + A  ++ V   G G ++T+ +AI  VP  NT R +I+++ G YR+ V + + K  ITL G+     V+T++ TA K            GT    S+I+  + F+A NI  +N+AP   G     QA+++R++ +  AFYNC+F G+QDT+    G  + K
Sbjct:   50 RKGLDPALVAAEAAPRIINVNPKG-GEFKTLTDAIKSVPAGNTKRVIIKMAHGEYREKVTIDRNKPFITLMGQPNAMPVITYDGTAAKY-----------GTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFK 209          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  237 MASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRT---LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + S +VTV Q+GTG++ T+ EA++  P          +I ++ GVY + V + K K  + + G     TV+T N             V G  TF   +  V   +FVA N+TF N+A     QAVA+R +AD   FY+C F  +QDTLY H  +Q+ +
Sbjct:  254 LVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNV----------VDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYR 401          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VAQDGTG++  V +A+   P  +  R +I I  G Y++ V + K K  + + G   + T+++ N +           V G  TF   +  V G  F+A +ITFEN+A     QAVA+R  +D   FY C   G+QDTLY H  +Q+ +
Sbjct:  211 VAQDGTGNFTNVTDAVLAAPDYSMRRYVIYIKRGTYKENVEIKKKKWNLMMIGDGMDATIISGNRSF----------VDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYR 348          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VAQ+GTG+Y T+ EAI   P  +  R +I I  G Y + + +P+ K +I   G     TV+  N +             G   F   +V V G  F+A++++F N A     QAVA+R ++D  A+Y C F  +QDT+Y+H  KQ+ +
Sbjct:  208 LVVAQNGTGNYTTIGEAISAAPNSSETRFVIYIKCGEYFENIEIPREKTMIMFIGDGIGRTVIKANRSYAD----------GWTAFHSATVGVRGSGFIAKDLSFVNYAGPEKHQAVALRSSSDLSAYYRCSFESYQDTIYVHSHKQFYR 347          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  237 MASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRT----LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + S +VTV+QDGTG++  +  A+   P  NT  +    LI ++ G+Y + + + K K  + + G     TV+T N +           V G  TF   +  V   +FVA NITF N+A     QAVA+R  AD   FY+C F  +QDTLY H  +Q+ +
Sbjct:  260 LISDIVTVSQDGTGNFTNITAAVAAAPN-NTDGSAGFFLIYVTAGIYEEYISIAKNKRYMMMIGDGINQTVVTGNRSV----------VDGWTTFNSATFAVTAPNFVAVNITFRNTAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYR 407          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VAQDG+G+ +T+QEA+         R +I I  G Y + + V K KN++   G     T++T + +             G  TF   +V V G++F+A +IT  N+A   + QAVA+R  +D   FY C F G+QDTLY+H  +Q+ +
Sbjct:  203 IVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEV-KLKNIM-FVGDGIGKTIITGSKSVGG----------GATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYR 340          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 56/148 (37.84%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            V VA+DG+G++ TV  A+      +T R +I I  G Y + V V K K  +   G     T +  N +           V G  TF   +V V G  F+A  I+FEN A     QAVA+R  AD  AFY C F+G+QDTLY+H  +Q+
Sbjct:   10 VVVAKDGSGNFTTVGAAVAAAKDSSTARFVIYIKEGAYFEYVDVDKKKTNLMFIGDGIGKTWIKGNRSV----------VDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQF 147          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME12_ARATH4.182e-1837.50Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME32_ARATH7.134e-1836.49Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME51_ARATH1.217e-1738.41Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME48_ARATH1.217e-1732.56Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PME41_ARATH1.217e-1734.81Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME_PRUPE4.624e-1735.14Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME40_ARATH4.624e-1734.00Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME7_ARATH6.039e-1735.22Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME2_CITSI6.039e-1734.67Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME_ACTDE7.887e-1737.84Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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