FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 51/150 (34.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            V+VA DGTG++  + +AI + P  ++ R +I I  G+Y + V + K K  I + G   + TV++ N +           + G  TF   +  V G  F+A +ITF+N+A     QAVA+R  +D   F+ C   G+QDTLY H  +Q+ +
Sbjct:  213 VSVALDGTGNFTKIMDAIKKAPDYSSTRFVIYIKKGLYLENVEIKKKKWNIVMLGDGIDVTVISGNRSF----------IDGWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALRSDSDLSVFFRCAMRGYQDTLYTHTMRQFYR 352          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 51/151 (33.77%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEA---IDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+  +RT+ +A   + R+      R +I I  GVY + + + +    I L G   + T++T N               G+ T+G  +  V G+ F A +ITFEN+A     QAVA+RV++D   FY C F G+QDTL+ H  +Q+ +
Sbjct:  208 VARDGSATHRTINQALAAVSRMGKSRLNRVIIYIKAGVYNEKIEIDRHMKNIMLVGDGMDRTIVTNNRNVPD----------GSTTYGSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSLFYRCSFKGYQDTLFTHSLRQFYR 348          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VA+DG+G YRT++ A+  VP  +  RT+I +  GVY + V V K             N ++  +  +  I   +   + GT TF   +  V G+ F+A ++ F N+A     QAVA+ V+AD  AFY C    +QDTLY+H  +Q+ +
Sbjct:  256 IVVAKDGSGKYRTIKRALQDVPEKSEKRTIIYVKKGVYFENVKVEKKM----------WNVIVVGDGESKSIVSGRLNVIDGTPTFKTATFAVFGKGFMARDMGFINTAGPSKHQAVALMVSADLTAFYRCTMNAYQDTLYVHAQRQFYR 395          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 51/160 (31.87%), Postives = 83/160 (51.88%), Query Frame = 3
Query:  228 VLKMASCVVTVAQDGTGHYRTVQEAIDRVPL--CNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            +L+     + VA+DG+GH+ TVQ AID        + R +I +  G+Y++ + V    + I L G    +T++T   +             G  T+   +  +EG  F+A+ ITF N+A    GQAVA+R ++D   FY C   G+QDTL +H  +Q+ +
Sbjct:  214 LLRAVRANLVVAKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVQG----------GYTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYR 363          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VAQDGTG Y+T+ EA+   P  N  R +I +  G+Y++ V V K K  + + G     T++T +             V+   TF   ++   G+ F+ ++I  +N+A     QAVA+RV AD      CR   +QDTLY H  +Q+ +
Sbjct:  235 VAQDGTGDYQTLAEAVAAAPDKNKTRYVIYVKMGIYKENVVVTKKKMNLMIVGDGMNATIITGS-----------LNVVDGSTFPSNTLAAVGQGFILQDICIQNTAGPEKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYR 371          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 59/153 (38.56%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  252 VTVAQDGTGH--YRTVQEAIDRVPLCN-TCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VTV ++G     Y+TVQEA+D  P  N T + +IRI  GVY + V VP  K  +   G     TV+T +    +          G  TF   +V V G+ F+A ++T EN+A   + QAVA R  +D     NC FLG QDTLY H  +Q+ K
Sbjct:  289 VTVCKNGGKDCKYKTVQEAVDSAPDTNRTVKFVIRIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQP---------GMTTFESATVGVLGDGFMARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYK 432          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DGTG YRT+ EA+   P  +  R +I +  G+Y++ V V   K  + + G     T++T N             V G+ TF   ++   G+ F+ ++I  +N+A     QAVA+RV AD+     CR   +QDTLY H  +Q+ +
Sbjct:  240 VAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGIYKENVEVSSRKMKLMIVGDGMHATIITGNLNV----------VDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYR 377          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 47/150 (31.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VA+DG+G Y T+ EA+  +P  +  R ++ +  G+Y + V     K  + L G   + T++T +             V G+ TF   +V   G+ F+A++I F+N+A     QAVA+R+ AD      CR   +QDTLY H  +Q+ +
Sbjct:  233 IVVAKDGSGDYETLNEAVAAIPDNSKKRVIVLVRTGIYEENVDFGYQKKNVMLVGEGMDYTIITGSRNV----------VDGSTTFDSATVAAVGDGFIAQDICFQNTAGPEKYQAVALRIGADETVINRCRIDAYQDTLYPHNYRQFYR 372          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 52/148 (35.14%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G+++T++EAID      + R +I +  GVY + + + K KN++ L G     T++T + +             GT TF   +V   G+ F+A  ITF N+A   + QAVA+R  +D   FY C F  +QDTLY+H  +Q+ +
Sbjct:  209 VAKDGSGNFKTIKEAIDAAS--GSGRFVIYVKQGVYSENLEIRK-KNVM-LRGDGIGKTIITGSKSVGG----------GTTTFNSATVAAVGDGFIARGITFRNTAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYR 342          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 52/153 (33.99%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  249 VVTVAQDGTGHYRTVQEAIDRVP--LCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            ++ V Q G G +  +QEAI+ +P  L N+    I + PG+YR+ V +P  K  ITL+G    NT L W++              G       ++ +   DFV   +T +N     +G+AVA+RV AD+ AFY C    +QDTL    G  Y K
Sbjct:   50 LIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNTFLIWSD--------------GEDILESPTLTIFASDFVCRFLTIQNKFGT-AGRAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFK 187          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME44_ARATH1.030e-1634.00Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME36_ARATH1.030e-1633.77Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME24_ARATH1.345e-1634.00Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME59_ARATH2.295e-1631.88Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME3_SOLLC2.295e-1633.11Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME64_ARATH2.997e-1638.56Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME22_SOLLC2.997e-1633.11Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME1_FICAW2.997e-1631.33Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME17_ARATH2.997e-1635.14Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME11_ARATH2.997e-1633.99Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
back to top