FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 51/150 (34.00%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VA+DG+G YRT+ EA+  V   N   T+I +  GVY + V V KTK  + + G     T+++               + GT TF   +  V G+ F+A ++ F N+A     QAVA+ V+AD   FY C    +QDT+Y H  +Q+ +
Sbjct:  258 IVVAKDGSGKYRTIGEALAEVEEKNEKPTIIYVKKGVYLENVRVEKTKWNVVMVGDGQSKTIVSAGLNF----------IDGTPTFETATFAVFGKGFMARDMGFINTAGPAKHQAVALMVSADLSVFYKCTMDAFQDTMYAHAQRQFYR 397          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VTVA DG+G  RTV EA+ RVP       +I +  G Y + V + K K  + + G   + T+++ +             V G  TF   +   EG+ F+ +++   N+A     QAVA R  +DR  +Y C F G+QDTLY H  +QY +
Sbjct:  661 VTVAADGSGDVRTVNEAVWRVPKKGKTMFVIYVKAGTYVENVLMKKDKWNVFIYGDGRDKTIISGSTNM----------VDGVRTFNTSTFATEGKGFMMKDMGIINTAGPEKHQAVAFRSDSDRSVYYRCSFDGYQDTLYTHSNRQYYR 800          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 51/161 (31.68%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  225 LVLKMASCVVTVAQDGTGHYRTVQEAIDRVPL--CNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            L L+     + VA+DG+GH++TVQ AID        + R +I +  G+Y++ + V    + I L G     T++T   +             G  T+   +  +EG  F+A+ I F+N+A    GQAVA+R ++D   FY C   G+QDTL +H  +Q+ +
Sbjct:  217 LQLQSVRANLVVAKDGSGHFKTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENLNVRLNNDNIMLVGDGMRYTIITGGRSVKG----------GYTTYSSATAGIEGLHFIAKGIAFQNTAGPAKGQAVALRSSSDLSIFYRCSIEGYQDTLMVHSQRQFYR 367          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  231 LKMASCVVTVAQDGTGHYRTVQEAIDRVPLCN-TCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            L  +S  + VAQD +GH+R++Q AI+         R +I +  GVYR+ + V    + I L G     T++T   +   ++H        TG FG       G+ FVA+++TF N+A    GQAVA+R ++D   FY     G+QDTLY+H  +Q+ +
Sbjct:  274 LAKSSPHLVVAQDRSGHFRSIQAAINFAARRRFKSRFVIYVKKGVYRENIDVGNDNHNIMLVGDGERKTIIT---SGRSVQHGYTTYNSATGGFG-------GQRFVAKDMTFINTAGPLRGQAVAVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFR 421          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G++ TV EA+   P       +I I  G+Y++ + + K K  +TL G   + TVL+ +             V G  TF   ++ V+   F+A+++   N+A     QAVA+R++ D    Y CR   +QDTLY + G+Q+ +
Sbjct:   48 VAKDGSGNFTTVNEAVAAAPENGVKPFVIYIKEGLYKEVIRIGKKKTNLTLVGDGRDLTVLSGDLNG----------VDGIKTFDSATLAVDESGFMAQDLCIRNTAGPEKRQAVALRISTDMTIIYRCRIDAYQDTLYAYSGRQFYR 185          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQP-VYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + V++DG G  +T+ EAI + P  +T R +I +  G Y +  + V + K  +   G     TV++   +                TF   S    G  F+A +ITFEN A     QAVA+R+ AD    Y C  +G+QDTLY+H  +Q+ +
Sbjct:  285 IIVSKDGNGTCKTISEAIKKAPQNSTRRIIIYVKAGRYEENNLKVGRKKINLMFVGDGKGKTVISGGKSIFD----------NITTFHTASFAATGAGFIARDITFENWAGPAKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSNRQFFR 425          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DGTG YRT+ EA+   P  +  R +I +  G Y++ V V   K  + + G     T++T +             V G+ TF   ++   G+ F+ ++I  +N+A     QAVA+RV AD+     CR   +QDTLY H  +Q+ +
Sbjct:  240 VAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVSSRKMNLMIIGDGMYATIITGSLNV----------VDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYR 377          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 3
Query:  237 MASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRT-----LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + S  V V    + ++ T+ +AI   P  N  R      +I    GVY + + VP  K  + L G     T++T N+            V G  T+ C S  V GE F+A ++TF N+A     QAVA+R  A+  +FY C F G+QDTLY+H  +Q+ +
Sbjct:  298 LVSKAVIVGPFKSDNFTTITDAIAAAP--NNTRPEDGYFVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIITGNHNV----------VDGWTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYVHSLRQFYR 445          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 48/148 (32.43%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VAQDGTG Y+T+ EA+   P  +  R +I +  G Y++ V V   K  + + G     T +T +             V G+ TF   ++   G+ F+ ++I  +N+A     QAVA+RV AD      CR   +QDTLY H  +Q+ +
Sbjct:  236 VAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNV----------VDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYR 373          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VTVA DGTG   TV EA+ +VP  +    +I +  G Y + V + K+K  + + G     T+++ +             V GT T+   +  ++G+ F+ ++I   N+A     QAVA R  +D   +Y C F G+QDTLY H  +Q+ +
Sbjct:  281 VTVAGDGTGDVLTVNEAVAKVPKKSLKMFVIYVKSGTYVENVVMDKSKWNVMIYGDGKGKTIISGSKNF----------VDGTPTYETATFAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYR 420          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME46_ARATH3.914e-1634.00Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME26_ARATH3.914e-1634.00Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME60_ARATH8.720e-1631.68Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME33_ARATH8.720e-1634.18Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME56_ARATH4.328e-1531.76Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME34_ARATH7.382e-1531.79Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME21_SOLLC7.382e-1532.43Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME25_ARATH1.259e-1433.13Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME1_SOLLC1.259e-1432.43Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME1_ARATH2.805e-1432.00Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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