FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQP-VYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            +TV++DG+G ++T+ EAI + P  ++ R +I +  G Y +  + V + K  +   G     TV+T   +                TF   +    G  F+  ++TFEN A     QAVA+RV  D    Y C  +G+QD LY+H  +Q+ +
Sbjct:  274 ITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGRYEEENLKVGRKKTNLMFIGDGKGKTVITGGKSIAD----------DLTTFHTATFAATGAGFIVRDMTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFR 414          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEG-----SGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            + V  +G G Y +VQ+AID VP+ N+   ++ +  G+Y++ V++P+ K  I + G     TV+   ++ + +++      + + TF      VE   FVA  I+  N AP G       Q+VA  V AD+ AFY+C F    +TL+ + G+ Y
Sbjct:   46 IIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVI--ESSQSSVDN------VASATFK-----VEANHFVAFGISIRNDAPVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHY 185          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTC-RTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA DG+G ++T+ EA+    L ++  RT I +  G Y + + +P  +  + L G     TV+  + +             G  T+   +V   GE F+A ++TF N+A   S QAVA+RV AD+   + C   G+QD+LY H  +Q+ +
Sbjct:  216 VAPDGSGTHKTIGEALLSTSLASSGGRTKIYLKAGTYHENINIPTKQKNVMLVGDGKGKTVIVGSRSNRG----------GWTTYKTATVAAMGEGFIARDMTFVNNAGPKSEQAVALRVGADKSVVHRCSVEGYQDSLYTHSKRQFYR 354          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G ++T+ EA+  V   +  R  + +  G Y + + + K    + + G   + T +  +               GT TF   +  V+G+ F+A++I F N+A     QAVA+R  +DR  F+ C F G+QDTLY H  +Q+ +
Sbjct:  276 VAKDGSGQFKTIGEALKLVKKKSEERFSVYVKEGRYVENIDLDKNTWNVMIYGDGKDKTFVVGSRNFMD----------GTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYR 413          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 46/148 (31.08%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA DG+G + +V EA+  +    + R++I ++ G Y++ + +P  +  + L G     TV+  + +             G  T+   +V   G+ F+A +ITF NSA   S QAVA+RV +DR   Y C   G+QD+LY    +Q+ +
Sbjct:  231 VAADGSGTHMSVAEALASLEK-GSGRSVIHLTAGTYKENLNIPSKQKNVMLVGDGKGKTVIVGSRSNRG----------GWNTYQSATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDRSVVYRCSIDGYQDSLYTLSKRQFYR 367          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 48/153 (31.37%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVP---LCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VTV    T ++ T+ EA+   P          +I    G+Y + V +   K  I L G     T+++ N++           + G  T+   +  V G+ FVA ++TF N+A     QAVA+R  AD   FY C F G+QDTLY+H  +Q+ +
Sbjct:  308 VTVGPYETDNFPTITEAVAAAPNHTFPEQGYFVIYARAGLYEEYVVISNKKRNIMLIGDGINKTIISGNHSF----------IDGWTTYNSSTFAVVGDRFVAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYR 450          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 55/155 (35.48%), Postives = 75/155 (48.39%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDR-VPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPE--NTVLTWNNT-ATKIEHHQAARVIGT------GTFGCGSVIVEGEDFVAENITFENSAPEG-----SGQAVAIRVTADRCAFYNCRFLGWQDTLYL 677
            VA DGT  Y+TVQ AID  V      R  I +  G+Y + V VP++   ITL G      NT + +NN   T     +    +GT      GT    + +V   DF A N+TF+NS  EG     +  AVA+ V  D+    N   +G QDTL++
Sbjct:   82 VAADGTAQYKTVQAAIDAAVNAGGVARRYISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVGTLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFV 236          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  204 CGCVSFFLVLKMASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSG---------QAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            C C+   +  K    +V   Q G G++ T+Q+AID VP+ NT    I +  G+YR+ + +P+ K  I + G    +T + W++ A+  +    A +               ++ V + ITF NS    S           AVA  +  D+ AFY+  F G QDTL+   G+ Y
Sbjct:   15 CFCLPHLIEAKPFEVIVD--QSGHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGKRSTRVEWDDHASLAQSPTFATL--------------ADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHY 171          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + V  +   +++TVQ AID +PL N     I IS G+Y + V +P+ K  I + G   E T++ + +       HQ      T T    ++I+ G  F  +     +S+P  +  AVA  +  D+ A  +  F G+QDTLY  YG+ Y K
Sbjct:   41 IIVNPNDARYFKTVQSAIDSIPLQNQDWIRILISNGIYSEKVTIPRGKGYIYMQGGGIEKTIIAYGD-------HQLTNTSATFTSYPSNIIITGITFKNKYNIASSSSP--TKPAVAAMMLGDKYAIIDSSFDGFQDTLYDDYGRHYYK 181          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 50/156 (32.05%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENS---APEGSGQ---AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            +TV  +G G++ TVQ AID +   N     +    G+YR+ V +PK K  I L G+  E TV+ +++       HQA  +  T T     +++ G       ITF+N+    P    +   AVA R+  DR    +  F+G QDTL+   G+ Y K
Sbjct:   35 ITVDLNGGGNFTTVQSAIDSISPPNHNWIRVFTQNGIYREKVTIPKEKGFIYLQGKGIEQTVIEYDD-------HQATDISATFTAFADDIVISG-------ITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYK 176          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME61_ARATH3.664e-1429.80Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME67_ARATH4.785e-1431.37Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME16_ARATH1.066e-1331.54Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU1.818e-1330.41Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME35_ARATH4.051e-1331.08Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME47_ARATH2.010e-1231.37Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME1_RALSO2.626e-1235.48Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME55_ARATH4.479e-1228.90Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME10_ARATH7.639e-1231.33Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME66_ARATH1.303e-1132.05Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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