FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME2_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 55/155 (35.48%), Postives = 74/155 (47.74%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDR-VPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAG--RCPENTVLTWNNT-ATKIEHHQAARVIGT------GTFGCGSVIVEGEDFVAENITFENSAPEGS-----GQAVAIRVTADRCAFYNCRFLGWQDTLYL 677
            VA DG+  Y+TVQ AID  V      R  I +  G Y + V VP++   ITL        NTV+ +NN   T     +    +GT      GT    + +V   +F A N+TF+NS  EG+       AVA+ V  D+    N   +G QDTLYL
Sbjct:   82 VAADGSAQYKTVQAAIDAAVADGGVARKYISVKAGTYNELVCVPESAPPITLYSLDANANNTVIVYNNANPTPASGAKTNPCMGTSSNATVGTVRSATAMVRASNFNARNLTFKNSYVEGTFADNNQSAVALAVRGDKAILENVSVIGNQDTLYL 236          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 43/147 (29.25%), Postives = 70/147 (47.62%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQ 692
            + VA+D TG+Y  V  AI   P  +  R +I I   +Y + V +   K+ +TL     ++T++T+N +++      + R   T TF        G+ F+  ++ F N+     G  V +RV  D    Y CR   +QD LY H  +Q
Sbjct:   78 ILVAKDVTGNYNIVNVAIAAAPQHSQKRFVIYIKTSIYVEIVVIGNMKSNLTLIADGQDSTIITFNLSSSN-----SKRTFNTATFASN-----GDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQ 214          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME2_RALSO1.702e-1135.48Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME57_ARATH2.903e-1129.25Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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