FC930671

Overview
NameFC930671
Unique NameFC930671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 50/152 (32.89%), Postives = 71/152 (46.71%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +  G +       EI  T   V  +F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVXQATTVEIFLTLQFVLCIFA 147          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGV--VKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            +A +AEFIAT LF++  V + +    +         G+  IA A    +FV V   A ISGGH+NPAVT GL +   +++   + Y V Q LGA     +++ ++  GQ     G       G ++ +G+  EI+ TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQ-YVTHGQAIPTHG-----VSGISEIEGVVMEIVITFALVYTVYA 158          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  190 YRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTV 618
            +R  +AE I TF  + I V +  G  + +       I  IA+ FG  +  L      ISG HINPAVT+G  +  ++S+ +++ Y+ +QC+GAI GA V+K  +     G L  G +  +   T G  +  E + TF+LV  V
Sbjct:   23 WRQLMAELIGTFFLVVIGVGSCTGGSEWSPS-----IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSG-LDLGVSSFSSTLTVGQAVLIEALITFILVVVV 159          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            +A I EFI TFLF++  V + M    S    + VG+  +A A   ++ V++  +AG ISGGH+NPAVTLGL L   +S+ RA  Y + Q L +         F+ +   G +    + +A G +   G+  EII TF L++TV++
Sbjct:   19 KALIVEFITTFLFVFAGVGSAMAT-DSLVGNTLVGLFAVAVAHAFVVAVMI--SAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAAC-----FLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYA 155          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 48/150 (32.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            RA ++EF+AT +F++ +  +V G+ K      T+G +  +A A    +   V  +   SGGH+NPAVT G+ + R++S  RA  Y   Q LGA+    ++          RLA G        + H   +   L  E++ TF LVYTV++
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLL----------RLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYA 168          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG------AEIIGTFVLVYTVFS 624
            RA I+EFIAT +F++ +  +V+ + K     ST G +  +A A    + V V     ISGGH+NPAVT G  +  ++SL RA+ Y V Q LGA+    ++          RLA G  +   G+    G+G       E + TF L+Y  ++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLL----------RLATG-GMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYA 165          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 51/156 (32.69%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  184 SFYRAGIAEFIATF-LFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH------GYTKGDGLGAEIIGTFVLVYTVFSAT 630
            S  +  +AEFI TF L L      V+     N     +G  G++ AFG  +  + +    ISG HINPAV++GL+ A++   T  L Y+  Q LG I GAGV+    G      L+GG     +      GYT    L  E++ TF+ +  +  +T
Sbjct:    2 SLVKRSVAEFIGTFWLVLGGCGAAVLAAAFPNLG---IGFAGVSLAFGLTLLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGST 154          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF 621
            RA +AEF +TF+F++    + + +VK   ++  S   +  +A A    +F  V  +  +SGGH+NPAV+ G  +  ++S+ RA++Y + Q LG+I  A V++               N+   G+    G+G       E++ TF L+YTV+
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVY 160          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 47/148 (31.76%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV----GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            RA I+EFIAT +F++ +  +V+ + K     ST+    G+  +A A    + V V     +SGGH+NPAVT G  +  ++SL RA+ Y   Q LGA+    +++   G  +    A     +A G   G  +  E + TF  VY  ++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFA-----LASGVGDGHAVLLEAVMTFGFVYAYYA 170          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 630
            RA  AEF+AT L+++  V +VM         +   +  IA  F  +  + V  T   SG H NPAVTL   +   +SL RA+ Y+  Q +GA  GA ++ G M       L  G NVV +  + G  +  E++ T  LV  VF++T
Sbjct:   25 RALFAEFLATGLYVFFGVGSVM-----RWPTALPSVLQIAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETL--GINVVRNSVSTGQAVAVELLLTLQLVLCVFAST 163          
The following BLAST results are available for this feature:
BLAST of FC930671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
MIP_CAVPO1.649e-1232.89Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP23_MAIZE2.153e-1234.25Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQP_HAEIX3.673e-1233.57Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP41_ARATH4.797e-1235.86Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_ORYSJ4.797e-1232.00Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE4.797e-1233.77Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQPZ_GLOVI4.797e-1232.69Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
TIPA_PHAVU6.265e-1229.80Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_MAIZE6.265e-1231.76Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
AQP6_HUMAN8.182e-1234.25Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34010A07EF PostHarvC1 Citrus clementina cDNA clone C34010A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930671 ID=FC930671; Name=FC930671; organism=Citrus clementina; type=EST; length=631bp
TGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCACCGGCG
CCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
GTTCTTGTCTACACAGTTTTCTCTGCCACTG
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