FC930671

Overview
NameFC930671
Unique NameFC930671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGV----VKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIG---TFVLVYTVFSA 627
            RA  AEF +TFLF++I+V + +          +  S++    +A AFG  +F  V+  A +SGGH+NPAVT    +   +++  A+FY   Q LG+   A +V  ++ AGQ    A     +A   T   G GA I+    TF++VYTV  A
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTF-ACLVLHYISAGQ----AVPTTRIAVEMT---GFGAGILEGVLTFMVVYTVHVA 159          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  178 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 489
            S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQAMPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: AQP2_DUGDU (Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  178 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 489
            S +F RA  +EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAAIL 99          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 51/152 (33.55%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVFS 624
            RA +AE I TFLF++  V + M  G +      + VG+  +A A   ++ V+V     +SGGHINPAVTLGL    +++L R+  Y+  Q LG+   A ++  F+     G       V  H    G G+GA      E + TF L++ V++
Sbjct:   19 RAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTL-ACLLLAFLAVADSG-------VPVHAL--GAGVGALRGVLMEAVLTFSLLFAVYA 160          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 1
Query:  292 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG------ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 630
            +G  G+A AFG  +  + Y   GISGGH NPAV+L L +A +L     + Y V Q LGAI  A ++   + +G+ G  AGG        +   GY+   GL  EII T   +  +  +T
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILY-VIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          
The following BLAST results are available for this feature:
BLAST of FC930671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TIP51_ORYSJ5.304e-1134.87Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQP2_HORSE5.304e-1138.46Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]
AQP2_DUGDU6.927e-1138.46Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=... [more]
TIP44_MAIZE9.047e-1133.55Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
AQPZ_BRUSU9.047e-1136.13Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010A07EF PostHarvC1 Citrus clementina cDNA clone C34010A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930671 ID=FC930671; Name=FC930671; organism=Citrus clementina; type=EST; length=631bp
TGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCACCGGCG
CCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
GTTCTTGTCTACACAGTTTTCTCTGCCACTG
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