FC930671

Overview
NameFC930671
Unique NameFC930671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.948e-13
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  154 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK---GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            ++ PG LK      A +AEFI+T +F++    + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y + Q LG+     +++   G +  G +G           G +  + L  EI+ TF LVYTV++
Sbjct:   14 VYHPGALK------AALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG---------LTGVSVWEALVLEIVMTFGLVYTVYA 160          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.948e-13
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  163 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG-LGA---EIIGTFVLVYTVFS 624
            P E       +A +AEFI+T +F+     + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R + Y + Q LG++    ++K            GG  V A G + G G L A   EI+ TF LVYTV++
Sbjct:   11 PDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK---------FATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYA 161          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLT--VMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG----LGAEIIGTFVLVYTVFS 624
            RA +AEFI+T +F++    +      +  N   +  G+   A A    +FV V   A ISGGH+NPAVT G+ L   ++L R + Y + Q LG++    ++             GG  + A G + G G    L  EI+ TF LVYTV++
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL---------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYA 162          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 50/152 (32.89%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T   V  +F+
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLTLQFVLCIFA 145          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  154 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            ++ PG LK      A  AEFI+T +F++    + M   K       +  G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y V Q LG+     +++   G    G+  G   +   G +  + L  EI+ TF LVYTV++
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTG----GQATGTFGLT--GVSVWEALVLEIVMTFGLVYTVYA 160          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 50/152 (32.89%), Postives = 72/152 (47.37%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T   V  +F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLTLQFVLCIFA 147          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 50/152 (32.89%), Postives = 72/152 (47.37%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +    + G     EI  T   V  +F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPAVSVGQATTVEIFLTLQFVLCIFA 147          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVK------SNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            RA +AEF++TF+F++    +++ + K      ++T  +T G +  +A A    +F  V     +SGGH+NPAVT    +  ++S+ RA++Y V Q +GAI    +++    G    G +         VA G ++  GL  EII TF LVY V+S
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH---------VASGVSELHGLLMEIILTFALVYVVYS 169          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI-CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVFS 624
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +FV V   A ISGGH+NPAV  G F+   ++L R + Y++ Q LG+I C A +V               ++V A G ++G G+G     EI+ TF LVYTV++
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLV-----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYA 159          
BLAST of FC930671 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  193 RAGIAEFIATFLFLYISVLTVMGVVK------SNTKCSTVG---IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 624
            RA +AEF++TF+F++ +  +++ + K      ++   +T G   +  +A AF   +F  V     +SGGH+NPAVT G  +  +++  RA++Y + Q LGAI    +++    G    G   RLA G   V       +GL  EII TF LVY V+S
Sbjct:   24 RATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVG--FRLASGVGAV-------NGLVLEIILTFGLVYVVYS 169          
The following BLAST results are available for this feature:
BLAST of FC930671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TIP11_ORYSJ1.948e-1333.33Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH1.948e-1335.00Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH3.322e-1333.33Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
MIP_RAT3.322e-1332.89Lens fiber major intrinsic protein (Fragment) OS=R... [more]
TIP11_MAIZE4.339e-1333.96Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
MIP_MOUSE4.339e-1332.89Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_HUMAN4.339e-1332.89Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP32_ARATH5.666e-1332.90Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP1_MEDSA9.665e-1334.44Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_ARATH1.649e-1233.76Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionC34010A07EF PostHarvC1 Citrus clementina cDNA clone C34010A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930671 ID=FC930671; Name=FC930671; organism=Citrus clementina; type=EST; length=631bp
TGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCACCGGCG
CCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
GTTCTTGTCTACACAGTTTTCTCTGCCACTG
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