FC930682

Overview
NameFC930682
Unique NameFC930682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:10..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STRIN (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus iniae GN=sodA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  227 EIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 622
            E M LHH KHH  YV N N A+E+       L + L  V+ S    ++ A+  NGGGH+NH++FW+ L+P      +   S    AID  FGS +A  ++ +A      GSGW WL + T+   L + +TANQD  +++
Sbjct:    5 ETMTLHHDKHHATYVANANAALEKHPEIGENLEELLANVE-SIPADIRQALINNGGGHLNHALFWELLSPEKTEVTKEVAS----AIDQAFGSFDAFKEQFAAAATGRFGSGWAWL-VVTKEGSLEITSTANQDTPISE 137          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STRAI (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus acidominimus GN=sodA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  218 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 652
            I  E M LHH KHH  YV N N A+E+       L   L+ VD +    ++ A+  NGGGH+NH++FW+ L+P          + L   ID  FGS +A  +  +       GSGW +L ++ + K L V +TANQD  +T+   L P+L +
Sbjct:    2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLSDVD-ALPADIRQALINNGGGHLNHALFWELLSPEK----TEISAELAADIDETFGSFDAFKEAFTTAATTRFGSGWAFLVVNPKGK-LEVISTANQDTPITQG--LKPILAL 145          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STRAY (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus alactolyticus GN=sodA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  218 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 652
            I  E M LHH KHH  Y+ N N A+E+  +    ++      T     ++ A+  NGGGH+NH++FW+ L P  +   EP    L  AI+  FGS E      +       GSGW WL ++ E K L V +T NQD  +++     P+LG+
Sbjct:    2 IDKETMILHHDKHHATYLANANAALEKHPEIGEDLEFLLSDVTRIPEDIRQALINNGGGHLNHALFWELLTPEKQ---EPTAEVLA-AIEDAFGSFEDFKTAFTQAATTRFGSGWAWLVVNQEGK-LEVMSTGNQDNPISQGKQ--PILGL 145          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_HALHI (Superoxide dismutase [Mn] (Fragment) OS=Haloarcula hispanica GN=sod PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 49/148 (33.11%), Postives = 64/148 (43.24%), Query Frame = 2
Query:  266 YVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYL 709
            YV     A E L +     D  +     G +  NG GH  H++FW+N+ P   GGGEP    L   I+  FGS E    K   E AA    GW  L  D   K+L        D          P+L +DVWEH+YY  Y   + D++
Sbjct:    2 YVNGLESAEETLAENRESGDFGSSAAAMGNVTHNGCGHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYEG--WKGEFEAAASAAGGWALLVYDPVAKQLRNVPVDKHDQGALWGSH--PILALDVWEHSYYYDYGPARGDFI 142          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM2_HALME (Superoxide dismutase [Mn] 2 (Fragment) OS=Halobacterium mediterranei GN=sod2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 2
Query:  266 YVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQY 685
            YV   N A E L +  +  D         ++  NG GH  H +FW+ + P   GGG  P   L   I++ FGS E   +    E A+    GW  L  D   K+L  +    + D  +  A    P+L +DVWEH+YY QY
Sbjct:    2 YVNGLNAAEETLRENRSSGDMDGSAAAMRSVSHNGCGHYLHHLFWRCMTP--NGGGGEPTGDLRDRIESDFGSYEGW-EAEFREAASWPAGGWALLVYDPVTKQLRNLAVQKHNDGALWSAH---PILALDVWEHSYYFQY 136          
The following BLAST results are available for this feature:
BLAST of FC930682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRIN1.617e-1537.41Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRAI4.705e-1536.18Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRAY2.335e-1435.10Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_HALHI4.869e-1233.11Superoxide dismutase [Mn] (Fragment) OS=Haloarcula... [more]
SODM2_HALME4.122e-1132.62Superoxide dismutase [Mn] 2 (Fragment) OS=Halobact... [more]

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Properties
Property NameValue
Genbank descriptionC34010B08EF PostHarvC1 Citrus clementina cDNA clone C34010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930682 ID=FC930682; Name=FC930682; organism=Citrus clementina; type=EST; length=736bp
GACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGTCTCGGTTGA
ATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGT
TCGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGG
GCTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACA
GCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAG
AAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCT
TTTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGG
GCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGG
AAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTC
CCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATAC
AAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGG
CTTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAA
TCAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTA
TAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCA
GATTATCTGAAAAACATTTGGAACGTAATGAACTGG
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