FC930682

Overview
NameFC930682
Unique NameFC930682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:10..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 111/196 (56.63%), Postives = 134/196 (68.37%), Query Frame = 2
Query:  146 LGLRGL-QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 730
            LG+ G+ Q  +LPDLPYDY AL+P I+ EIMQLHH KHH AY+ N N A E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYYLQ KNV+PDYLK IW V+
Sbjct:   17 LGILGVRQKHSLPDLPYDYGALQPHINAEIMQLHHSKHHAAYLNNLNIAEEKYQEALAKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQLKNVRPDYLKAIWKVI 208          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 106/188 (56.38%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDLP+DY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNGGGH+NHSIFW NLA   + GGEP    +   I   FGSL+ L +++S    A+QGSGW WLG   + K L + T ANQDPL      +VPL GIDVWEHAYYLQYKNV+PDY+  IW + NW
Sbjct:   27 TLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA---KDGGEPSKELMD-TIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANW 206          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 103/196 (52.55%), Postives = 136/196 (69.39%), Query Frame = 2
Query:  149 GLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            G+RG  T  LP LPYDY+ALEP I  EIM+LHHQKHHQ YV N N A EQL +A +K DT+ ++QL  A++FNGGGH+NH+IFW+NL+P        P   L  AI++ + SLE   ++++    A+QGSGW WLG + +  +L +    NQDPL   +  L+PL GIDVWEHAYYLQYKNV+P Y++ IW++ NW
Sbjct:   14 GVRGKHT--LPKLPYDYAALEPIICREIMELHHQKHHQTYVNNLNAAEEQLEEAKSKSDTTKLIQLAPALRFNGGGHINHTIFWQNLSP----NKTQPSDDLKKAIESQWKSLEEFKKELTTLTVAVQGSGWGWLGFNKKSGKLQLAALPNQDPL-EASTGLIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANW 202          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.142e-54
Identity = 99/188 (52.66%), Postives = 132/188 (70.21%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGG H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLK+  +++NW
Sbjct:    8 LPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINW 193          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.425e-53
Identity = 105/203 (51.72%), Postives = 134/203 (66.01%), Query Frame = 2
Query:  128 LGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            +GK+  L  + L+ V LPDLPYDY ALEP +S EIMQ+HH KHH AYV   N+A E++ +AL K DT   V     + FN GGH+NH++FW+ L  V   G   P+S L  AI   FGSLE +I K++A+  A+QGSGW WL  D E KRL +    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K IW + NW
Sbjct:   13 VGKNYCLNTQRLKHV-LPDLPYDYGALEPILSAEIMQVHHGKHHAAYVNALNQAEEKVKEALAKGDTQAAVAGTKLMNFNTGGHINHTLFWEGLTAVKNSG--EPNSELMTAIKKDFGSLETMIDKLNAKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANW 211          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.821e-52
Identity = 110/196 (56.12%), Postives = 135/196 (68.88%), Query Frame = 2
Query:  155 RGLQT-VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS-SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            RG+ T  TLP LPY Y+ALEPA+S  IM+LHH KHHQ YV N N A E+L  A   +D    V LQ AIKFNGGGH+NHS+FWK LAP  EGGG+P  S SL  AI + +GSLE   ++M+A  A++QGSGW WL +D +   L + TTANQD +V       P++GID WEHAYY QY+N K +Y K IWNV+NW
Sbjct:   20 RGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKL--ADPNLDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK----PIIGIDAWEHAYYPQYENRKAEYFKAIWNVINW 208          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.685e-52
Identity = 112/194 (57.73%), Postives = 133/194 (68.56%), Query Frame = 2
Query:  134 KSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLK 712
            +S+  GL   Q  TLPDLPYDY ALEP IS EIMQLHH KHHQ YV N N A E+L +A  K D ST++ L  A++FNGGGH+NHSIFW+NL+     GGEP    L  AI+  FGS+E +  ++SA+  A+QGSGW WLG   E   L + T  NQDPL  +A T LVPL GIDVWEHAYYLQYKNV+   LK
Sbjct:   10 RSLRAGLWCRQKHTLPDLPYDYGALEPTISAEIMQLHHSKHHQTYVNNLNVAEEKLAEAKEKGDVSTIISLAPALRFNGGGHINHSIFWQNLS---ADGGEPEGELLA-AINRDFGSVENMKNQLSAQTVAVQGSGWGWLGYIAE-GALQIATCPNQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRRIMLK 196          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.829e-51
Identity = 98/191 (51.31%), Postives = 134/191 (70.16%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            +LP+L Y++SA EP ISG+I ++H+ KHHQ YV N N ++EQ  +A +K +   +V L+ AI FNGGG++NH ++WKNLAPV +GGG+PP   S LG  I   FGSL+ LI+  + + A +QGSGW ++  +      + V TTANQD +    P LVPL+ ID WEHAYYLQY+NVK DY KN+W+V+NW
Sbjct:   37 SLPELDYEFSATEPYISGQINEIHYTKHHQTYVNNLNASIEQAVEAKSKGEVKKLVALEKAINFNGGGYLNHCLWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIEITNGKLAGIQGSGWAFIVKNKANGDTIDVITTANQDTVTD--PNLVPLIAIDAWEHAYYLQYQNVKADYFKNLWHVINW 225          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_GANMI (Superoxide dismutase [Mn], mitochondrial OS=Ganoderma microsporum PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.119e-51
Identity = 100/191 (52.36%), Postives = 132/191 (69.11%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LPDLPY Y+ALEP IS +IM+LHH+KHHQ YV + N A +   +A    +    + LQ A+KFNGGGH+NHS+FWKNLAP        GG      L  AI+ ++GS++  I++ +A  AA+QGSGW WLGL+   KRL + TTANQDPL++     VP++G+D+WEHA+YLQY NVK DYL  IW V+N+
Sbjct:    5 LPDLPYAYNALEPFISQQIMELHHKKHHQTYVNSLNAAEQAYAKASTPKER---IALQSALKFNGGGHINHSLFWKNLAPAKSEGKGNGGALADGPLKSAIEQNWGSVDNFIKEFNATTAAIQGSGWGWLGLNPATKRLEITTTANQDPLLSH----VPIIGVDIWEHAFYLQYLNVKADYLAAIWIVINF 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_YEAST (Superoxide dismutase [Mn], mitochondrial OS=Saccharomyces cerevisiae GN=SOD2 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 107/223 (47.98%), Postives = 138/223 (61.88%), Query Frame = 2
Query:  107 ATRKAIGLGKSVGLGLRGLQT----VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV--------DTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            A   A  L K  GL L         VTLPDL +D+ ALEP ISG+I +LH+ KHHQ YV  +N AV+Q FQ L+ +        +   ++ +Q  IKF+GGG  NH +FW+NLAP  +GGGEPP  +L  AID  FGSL+ LI+  + + A +QGSGW ++  + +   +L V  T NQD   T    LVPL+ ID WEHAYYLQY+N K DY K IWNV+NW
Sbjct:    3 AKTAAANLTKKGGLSLLSTTARRTKVTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDLLAKEPSPANARKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNKKADYFKAIWNVVNW 221          
The following BLAST results are available for this feature:
BLAST of FC930682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_CAVPO1.036e-5456.63Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM2_CAEEL2.308e-5456.38Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_DROME3.937e-5452.55Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_CHLTR5.142e-5452.66Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_ONCVO7.425e-5351.72Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_SCHPO2.821e-5256.12Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]
SODM_CHAFE3.685e-5257.73Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODM_CANAL1.829e-5151.31Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]
SODM_GANMI3.119e-5152.36Superoxide dismutase [Mn], mitochondrial OS=Ganode... [more]
SODM_YEAST1.109e-4847.98Superoxide dismutase [Mn], mitochondrial OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC34010B08EF PostHarvC1 Citrus clementina cDNA clone C34010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930682 ID=FC930682; Name=FC930682; organism=Citrus clementina; type=EST; length=736bp
GACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGTCTCGGTTGA
ATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGT
TCGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGG
GCTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACA
GCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAG
AAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCT
TTTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGG
GCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGG
AAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTC
CCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATAC
AAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGG
CTTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAA
TCAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTA
TAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCA
GATTATCTGAAAAACATTTGGAACGTAATGAACTGG
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