FC930682

Overview
NameFC930682
Unique NameFC930682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:10..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_ASPOR (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus oryzae GN=sodB PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 91/192 (47.40%), Postives = 119/192 (61.98%), Query Frame = 2
Query:  167 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAP--VHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            T +LP LPY Y ALEP I  +IM++HHQKHHQ Y+TN N A+     AL   +   ++ LQ  IKFNGGGH+NHS+FWKNLAP    E   +     L  AI+  +GS+E   +   A    LQGSGW WL  +    +L + +T +QDP+  K    VP+ G+D+WEHAYYLQY N K  Y++ IW V+NW
Sbjct:    4 TFSLPPLPYAYDALEPVICKQIMEIHHQKHHQTYITNLNAALSAQSTALAANNIPQLINLQQKIKFNGGGHINHSLFWKNLAPHASPETNIDQAAPVLKAAIEAQYGSVEKFKEAFGATLLGLQGSGWGWLVANGPGGKLEIVSTKDQDPVTDK----VPVFGVDMWEHAYYLQYFNNKASYVEGIWKVLNW 191          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 93/188 (49.47%), Postives = 118/188 (62.77%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDL YDY ALEP ISG+I +LHH KHH AYV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHAAYVKGVNDAVAKLDEARANGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.363e-45
Identity = 98/191 (51.31%), Postives = 117/191 (61.26%), Query Frame = 2
Query:  167 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            T  LP+L Y Y ALEP I+ EIM+LHH KHH  YV   N A+E+L +A    +   VV  L   + FN GGH NHSIFWKNL+P   GGGEP   +L  AI   FGS E      SA    LQGSGW  LG D    RLV+E   +Q   ++    L PLL +D+WEHA+YLQYKNVK DY+K +WNV NW
Sbjct:    2 TYALPELDYAYDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVVTALSKDLAFNLGGHTNHSIFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNISA--NLTPLLMLDMWEHAFYLQYKNVKADYVKAVWNVFNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_MYCSM (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=4)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_MYCS2 (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 91/188 (48.40%), Postives = 118/188 (62.77%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTVGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 91/188 (48.40%), Postives = 118/188 (62.77%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.300e-44
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLPDL +DY ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHS++WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYEALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSLWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 93/195 (47.69%), Postives = 125/195 (64.10%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNW 194          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 93/195 (47.69%), Postives = 125/195 (64.10%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNW 194          
The following BLAST results are available for this feature:
BLAST of FC930682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_ASPOR2.558e-4547.40Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_MYCFO3.341e-4549.47Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_CORDI4.363e-4551.31Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM_MYCSM2.165e-4447.87Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCS22.165e-4447.87Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCPA2.165e-4448.40Superoxide dismutase [Mn] OS=Mycobacterium paratub... [more]
SODM_MYCAV2.828e-4448.40Superoxide dismutase [Mn] OS=Mycobacterium avium G... [more]
SODM_MYCLP6.300e-4447.87Superoxide dismutase [Mn] OS=Mycobacterium lepraem... [more]
SODM_THET81.075e-4347.69Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET21.075e-4347.69Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionC34010B08EF PostHarvC1 Citrus clementina cDNA clone C34010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930682 ID=FC930682; Name=FC930682; organism=Citrus clementina; type=EST; length=736bp
GACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGTCTCGGTTGA
ATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGT
TCGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGG
GCTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACA
GCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAG
AAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCT
TTTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGG
GCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGG
AAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTC
CCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATAC
AAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGG
CTTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAA
TCAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTA
TAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCA
GATTATCTGAAAAACATTTGGAACGTAATGAACTGG
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