FC930682

Overview
NameFC930682
Unique NameFC930682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:10..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 94/203 (46.31%), Postives = 118/203 (58.13%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +     +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+N +PDYL   WNV+NW
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDG--KLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNW 200          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40
Identity = 87/198 (43.94%), Postives = 119/198 (60.10%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDW 192          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.208e-40
Identity = 86/195 (44.10%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  170 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINW 190          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.208e-40
Identity = 86/195 (44.10%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  170 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINW 190          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.208e-40
Identity = 83/197 (42.13%), Postives = 120/197 (60.91%), Query Frame = 2
Query:  167 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW  L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y++  WNV+NW
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIETFWNVINW 191          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 84/193 (43.52%), Postives = 116/193 (60.10%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNW 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 84/193 (43.52%), Postives = 116/193 (60.10%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNW 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 86/199 (43.22%), Postives = 116/199 (58.29%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLP+L Y Y+ALEP    + M++HH KHHQAYV N N A+E L   L ++    ++        + +GA++ N GGH NHS+FWK+L       G     +L  AI+  FGS++A   +     A   GSGW WL L  E K  VV T    +PL+ K        PLLG+DVWEHAYYL+++N +PDY+K  WNV+NW
Sbjct:    4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNW 197          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 88/194 (45.36%), Postives = 112/194 (57.73%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WNV+NW
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNW 191          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 87/194 (44.85%), Postives = 112/194 (57.73%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+N +P+Y+   WN++NW
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNG--ELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQNRRPEYIAAFWNIVNW 191          
The following BLAST results are available for this feature:
BLAST of FC930682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_DEIRA1.112e-4046.31Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM1_BACAN1.452e-4043.94Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_STRR67.208e-4044.10Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN7.208e-4044.10Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_LISMO7.208e-4042.13Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_STAES9.414e-4043.52Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ9.414e-4043.52Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_HAEIN9.414e-4043.22Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_BACST9.414e-4045.36Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA9.414e-4044.85Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]

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Properties
Property NameValue
Genbank descriptionC34010B08EF PostHarvC1 Citrus clementina cDNA clone C34010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930682 ID=FC930682; Name=FC930682; organism=Citrus clementina; type=EST; length=736bp
GACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGTCTCGGTTGA
ATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGT
TCGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGG
GCTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACA
GCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAG
AAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCT
TTTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGG
GCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGG
AAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTC
CCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATAC
AAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGG
CTTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAA
TCAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTA
TAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCA
GATTATCTGAAAAACATTTGGAACGTAATGAACTGG
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