FC930682

Overview
NameFC930682
Unique NameFC930682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:10..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 86/189 (45.50%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKF--NGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LPDLPY Y ALEP IS +IM+LHH+K              Q  +   +  T+ V     ++ F     GH+NHS+FW+NLAP    GG+     L  AID  FG L+ L ++ +   A +QGSGW WLG++   KRL + TT NQDPL+     LVP++G+D+WEHA+YLQY NVK DYL  IW+V+N+
Sbjct:    5 LPDLPYAYDALEPYISRQIMELHHKKTSSDLCE-----CAQHCRGCLRHSTAVVGGFDLSLFFILTTLGHINHSLFWQNLAPAAGAGGQLKPGPLKDAIDQTFGGLDNLKKEFNTTTAGIQGSGWGWLGVNPSNKRLEISTTPNQDPLL----NLVPIIGVDIWEHAFYLQYLNVKADYLNAIWSVINF 184          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 84/194 (43.30%), Postives = 115/194 (59.28%), Query Frame = 2
Query:  188 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            PY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDW 207          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_EPTST (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Eptatretus stoutii PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 83/147 (56.46%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  218 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 658
            IS EIMQLHH KHH AYV N N   E+L +AL K D +T V LQ A +FNGGGH+NHSIFW+NL+P   GGG+P    L  AI+  FGS++ L +K+ A    +QGSGW WLG + E KRL + T ANQDPL      L PLLGIDV
Sbjct:    2 ISAEIMQLHHSKHHAAYVNNVNVVEEKLAEALGKGDVNTQVSLQPAFRFNGGGHINHSIFWRNLSP--SGGGQPCGDLLK-AIENDFGSVDKLREKLVAAAVGVQGSGWAWLGFNKESKRLQIATCANQDPL-QGTTGLFPLLGIDV 144          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 85/199 (42.71%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNW 195          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 85/199 (42.71%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  173 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNW 195          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNW 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNW 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNW 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNW 188          
BLAST of FC930682 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  176 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 736
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNW 188          
The following BLAST results are available for this feature:
BLAST of FC930682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_AGABI1.041e-3845.50Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODM1_BACCR1.041e-3843.30Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_EPTST5.166e-3856.46Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_SHIFL6.747e-3842.71Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_ECO576.747e-3842.71Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM1_STAAW6.747e-3842.49Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS6.747e-3842.49Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR6.747e-3842.49Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN6.747e-3842.49Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM6.747e-3842.49Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC34010B08EF PostHarvC1 Citrus clementina cDNA clone C34010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930682 ID=FC930682; Name=FC930682; organism=Citrus clementina; type=EST; length=736bp
GACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGTCTCGGTTGA
ATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGT
TCGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGG
GCTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACA
GCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAG
AAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCT
TTTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGG
GCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGG
AAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTC
CCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATAC
AAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGG
CTTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAA
TCAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTA
TAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCA
GATTATCTGAAAAACATTTGGAACGTAATGAACTGG
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