FC930683

Overview
NameFC930683
Unique NameFC930683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  292 KHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSH--SSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRR-NHELNWKQRYDIITGIARGLLYLHE 681
            KH+   +L   T++F   N +G G  G VY+ +L +G+  AVKKL    S  Q   EF      +  ++H N+V L+GYCA   ++LL+YEY  N +L   L        +L+W  R  +  G AR L YLHE
Sbjct:  471 KHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHE 603          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  352 LGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLG-YCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLH 678
            +G+  +G VYK  L+DG ++AVK+L     + +KEFENE  +L R++H N++ L   Y     EKL++++Y+   SL   L     +  +NW  R  +I G+ARGL YLH
Sbjct:  494 MGKSTYGTVYKATLEDGSQVAVKRLREKITKSQKEFENEINVLGRIRHPNLLALRAYYLGPKGEKLVVFDYMSRGSLATFLHARGPDVHINWPTRMSLIKGMARGLFYLH 603          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 45/129 (34.88%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  298 FPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHED 684
            F F  +  AT +F  + K+GEGG+G +Y G L    ++A+K L+ +S+QG  E++ E  +L++++H N++ L+G C  G    L+YEY+   SL+  L     +  L+W+ R  I T I   L++LH +
Sbjct:  469 FSFSEIEEATNHFDSTLKIGEGGYGSIYVGLLRH-TQVAIKMLNPNSSQGPVEYQQEVDVLSKMRHPNIITLIGACPEGWS--LVYEYLPGGSLEDRLTCKDNSPPLSWQNRVRIATEICAALVFLHSN 594          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 51/135 (37.78%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  298 FPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRN-----HELNWKQRYDIITGIARGLLYLHEDS 687
            F  + +V AT NF  SN LG GGFG V+KG LDDG  +AVK+    + +   +  NE ++L +V H+N+V LLG C      +L+YE+V N +L + ++            L  ++R  I    A+GL YLH  S
Sbjct:  342 FTGKEIVKATDNFAKSNLLGFGGFGEVFKGNLDDGTTVAVKRAKLGNEKSIYQIVNEVQILCQVSHKNLVKLLGCCIELEMPVLVYEFVPNGTLFEHIYGGGGGGGGLYDHLPLRRRLMIAHQTAQGLDYLHSSS 476          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: WAK3_ARATH (Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  292 KHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHEDS 687
            K F  E +  AT  +  S  LG+GG G VYKG L D   +A+KK   + ++   +F +E  +L+++ HRNVV +LG C      LL+YE++ N +L   L  S  +  L W+ R  I   +A  L YLH  +
Sbjct:  401 KIFTEEGMKEATNGYDESRILGQGGQGTVYKGILPDNTIVAIKKARLADSRQVDQFIHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITNGTLFDHLHGSIFDSSLTWEHRLRIAIEVAGTLAYLHSSA 532          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  286 EQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHED 684
            E   + F  +  AT  F PS KLGEG +G VYKG L    ++AVK L    +    EFE   ++L+RV+H N+V L+G C     + LIY+Y+ N SL+           L+W+ R  I + I   LL+LH +
Sbjct:  444 EMLDYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQH-LQVAVKMLPSYGSLNHFEFERRVEILSRVRHPNLVTLMGACPE--SRSLIYQYIPNGSLEDCFSSENNVPALSWESRIRIASEICSALLFLHSN 573          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: WAKLS_ARATH (Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 49/129 (37.98%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  292 KHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLH 678
            K F  E +  AT  +  S  LG+GG   VYKG L D   +A+KK     N   ++F NE  +L+++ HRNVV LLG C      LL+YE++   SL   L  S     L W+ R +I   +A  + YLH
Sbjct:   94 KIFTEEDMKEATNGYDVSRILGQGGQWTVYKGILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSMFVSSLTWEHRLEIAIEVAGAIAYLH 222          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  238 RREGDNEEDLEKIAAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSN-QGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLF-KSRRNHELNWKQRYDIITGIARGLLYLHEDSH 690
            RR+G  E+D       E        +++AT N +    +G G  G VY+  L  G+  AVK+L  +S+ +  +    E   + +V+HRN++ L G+     + L++Y Y+   SL  VL   S + + L+W  RY++  G+A GL YLH D H
Sbjct:  795 RRKGRPEKDAYVFTQEEGPSLLLNKVLAATDNLNEKYTIGRGAHGIVYRASLGSGKVYAVKRLVFASHIRANQSMMREIDTIGKVRHRNLIKLEGFWLRKDDGLMLYRYMPKGSLYDVLHGVSPKENVLDWSARYNVALGVAHGLAYLHYDCH 947          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  304 FEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSN-QGKKEFENEAKLLARVQHRNVVNLLGYCAHGAE--KLLIYEYVINESLDKVLF---KSRRNHELNWKQRYDIITGIARGLLYLHED 684
            ++ ++ AT   +    +G GG G VYK +L +G  IAVKK+    +    K F  E K L  ++HR++V L+GYC+  A+   LLIYEY+ N S+   L     +++   L W+ R  I  G+A+G+ YLH D
Sbjct:  938 WDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSVWDWLHANENTKKKEVLGWETRLKIALGLAQGVEYLHYD 1070          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  322 ATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSS--NQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHE-LNWKQRYDIITGIARGLLYLHE 681
            AT +F   N LGEG FG VY+ + DDG+ +AVKK+  S+  +    +F      +A + H NV  L+GYCA   + L++YE+  N SL   L  S    + L W  R  I  G AR L YLHE
Sbjct:  412 ATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEESKALVWNSRVKIALGTARALEYLHE 534          
The following BLAST results are available for this feature:
BLAST of FC930683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
SRF3_ARATH6.039e-1736.84Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
IMK3_ARATH6.039e-1739.09Probable leucine-rich repeat receptor-like protein... [more]
PUB33_ARATH7.887e-1734.88U-box domain-containing protein 33 OS=Arabidopsis ... [more]
WAKLP_ARATH1.030e-1637.78Wall-associated receptor kinase-like 15 OS=Arabido... [more]
WAK3_ARATH1.030e-1636.36Wall-associated receptor kinase 3 OS=Arabidopsis t... [more]
PUB32_ARATH1.030e-1637.59U-box domain-containing protein 32 OS=Arabidopsis ... [more]
WAKLS_ARATH1.345e-1637.98Putative wall-associated receptor kinase-like 16 O... [more]
PEPR1_ARATH1.345e-1632.03Leucine-rich repeat receptor-like protein kinase P... [more]
GSO2_ARATH1.345e-1636.84LRR receptor-like serine/threonine-protein kinase ... [more]
SRF6_ARATH1.757e-1640.65Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34010B09EF PostHarvC1 Citrus clementina cDNA clone C34010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930683 ID=FC930683; Name=FC930683; organism=Citrus clementina; type=EST; length=699bp
GACATAACAAGGAAACAGAAGAAAAAGAAACCTCAACTTCATCAAATAGT
CTACAAAATCCAAATATCAACATCCTCCTTCTCCCGTCACCACCATCTCC
TAAACGCTCACAAATTTTCTCAATCTTTTTTCACAGACTTAATTGTTTGA
TTGGCAACTTTCCATGAGCAGAGGAAGGACATGACCAAACCCAAGAAATT
CTTTGATGGTCTTTTGAAACACTTCAATCTTGGTTCTAGAAGAGAGGGTG
ACAACGAAGAAGATTTGGAGAAGATTGCTGCTCGGGAACAGAAGCACTTT
CCATTTGAAGCTTTAGTTTCTGCTACCAAAAATTTTCACCCTTCTAATAA
GCTTGGTGAGGGAGGCTTTGGACCTGTCTACAAGGGGAAGTTGGATGATG
GAAGAGAAATTGCAGTGAAGAAGCTGTCTCATAGTTCGAATCAAGGGAAG
AAGGAATTTGAGAATGAGGCTAAGTTGTTGGCTCGTGTGCAGCACCGGAA
TGTTGTGAATCTGTTGGGGTATTGTGCTCATGGAGCGGAGAAGCTATTGA
TTTATGAGTATGTCATAAACGAGAGTCTGGACAAGGTTCTCTTCAAATCG
AGAAGAAATCATGAGCTTAATTGGAAGCAAAGGTATGACATTATCACTGG
CATTGCTCGGGGATTGCTTTACCTTCATGAGGATTCACACACTGCATCA
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