FC930683

Overview
NameFC930683
Unique NameFC930683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 40/125 (32.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  298 FPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLY 672
            F F AL +AT +F P N + +     V+KG+L +G  +A+K+ ++ +    K F  EA+ + +++H+ +VNL+GYC  G ++ L+ +++ N++L K LF+ R+   ++W  R  +   +A  L Y
Sbjct:   38 FSFSALKTATNHFSPENIVSDQTSDVVFKGRLQNGGFVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQ-RKYQTMDWSIRLRVAYFVAEALDY 161          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  235 SRREGDNEEDLEKIAAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHS--SNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFK----SRRNHELNWKQRYDIITGIARGLLYLHEDSH 690
            ++R GDN+     +    +K    E L+ A+        LG  G   +YK  L+DGR  AV++L  +  S +  K+FE   + + ++ H N+V L G+     EKL+IY++V N SL    ++    S   + L W+ R  I  GIARGL YLHE  H
Sbjct:  425 NQRSGDNK----LVTVDGEKEMEIETLLKASAYI-----LGATGSSIMYKAVLEDGRVFAVRRLGENGLSQRRFKDFEPHIRAIGKLVHPNLVRLCGFYWGTDEKLVIYDFVPNGSLVNPRYRKGGGSSSPYHLPWETRLKIAKGIARGLAYLHEKKH 573          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  346 NKLGEGGFGPVYKGKLDDGREIAVKKL----------SHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHED 684
            N +G+G  G VYK ++ +   IAVKKL             S+  +  F  E K L  ++H+N+V  LG C +   +LL+Y+Y+ N SL  +L +      L W+ RY II G A+GL YLH D
Sbjct:  789 NVIGKGCSGIVYKAEMPNREVIAVKKLWPVTVPNLNEKTKSSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNKNTRLLMYDYMSNGSLGSLLHERSGVCSLGWEVRYKIILGAAQGLAYLHHD 911          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: KPEL_DROME (Serine/threonine-protein kinase pelle OS=Drosophila melanogaster GN=pll PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 AAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSH-SSNQGKKEFE-----NEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNH---ELNWKQRYDIITGIARGLLYLH 678
            AA       +  L +AT  + P N+LG+GGFG VY+GK     ++A+K +++ S N  +K  E     NE K L  ++H N++ L GY   G +  L+Y+ +   SL+  L   +  +    L W+QR+ I  G ARG+ +LH
Sbjct:  194 AAESLLEIDYAELENATDGWSPDNRLGQGGFGDVYRGKWKQ-LDVAIKVMNYRSPNIDQKMVELQQSYNELKYLNSIRHDNILALYGYSIKGGKPCLVYQLMKGGSLEARLRAHKAQNPLPALTWQQRFSISLGTARGIYFLH 335          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y1061_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610 OS=Arabidopsis thaliana GN=At1g50610 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  352 LGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHEDSHT 693
            LG G FG  YK  +  G+ + VK+  H +N G+ EF    + L R+ H N++ L+ Y     EKLL+ E++ N SL   L  +  +  L+W  R  II G+A+GL YL ++  T
Sbjct:  381 LGSGTFGASYKAAISSGQTLVVKRYKHMNNVGRDEFHEHMRRLGRLNHPNILPLVAYYYRREEKLLVTEFMPNSSLASHL-HANNSAGLDWITRLKIIKGVAKGLSYLFDELPT 493          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 55/151 (36.42%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  244 EGDNEEDLEKIAAREQKHFPFEALVSATKNFHPSNKLGE----GGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLG-YCAHGAEKLLIYEYVINESLDKVLFKSR-RNHELNWKQRYDIITGIARGLLYLH 678
            EGD E+++ +    E K   F+   + T +    N  G+      +G VYK KL DG  IA++ L   + + +       + L R++H N+V L   Y     EKLLIY+Y+ N SL  +L +S+ R   LNW +R+ I  GIARGL YLH
Sbjct:  340 EGDEEDEIGEKEGGEGKLVVFQGGENLTLD-DVLNATGQVMEKTSYGTVYKAKLSDGGNIALRLLREGTCKDRSSCLPVIRQLGRIRHENLVPLRAFYQGKRGEKLLIYDYLPNISLHDLLHESKPRKPALNWARRHKIALGIARGLAYLH 489          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  343 SNKLGEGGFGPVYKGKL-DDGREIAVKKLSHSSN-QGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLF-KSRRNHELNWKQRYDIITGIARGLLYLH 678
            ++++GEG FG VYK  L + GR +AVKKL  S   Q  ++F+ E ++LA+ +H N+V++ GY       LL+ EY+ N +L   L  +      L+W  RY II G A+GL YLH
Sbjct:  729 ASRIGEGVFGTVYKAPLGEQGRNLAVKKLVPSPILQNLEDFDREVRILAKAKHPNLVSIKGYFWTPDLHLLVSEYIPNGNLQSKLHEREPSTPPLSWDVRYKIILGTAKGLAYLH 843          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: RLK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  286 EQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLF--KSRRNHELNWKQRYDIITGIARGLLYLHED 684
            +++ F  + L+ A+        LG G FG  YK  L  G+ + VK+    +N G+ EF+   K L R+ H N+++++ Y     EKLL+ ++    SL   L   +S     L+W  R  I+ G+A+GL YLH+D
Sbjct:  346 DREKFDLQDLLKASAEI-----LGSGCFGASYKAVLSSGQMMVVKRFKQMNNAGRDEFQEHMKRLGRLMHHNLLSIVAYYYRKEEKLLVCDFAERGSLAINLHSNQSLGKPSLDWPTRLKIVKGVAKGLFYLHQD 475          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  331 NFHPSNKLGEGGFGPVYKGKLDDGREIAVKKL-SHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLF--KSRRNHE----LNWKQRYDIITGIARGLLYLHE 681
            NF     +GEG +G V+ GK   G  +A+KKL + SS +   +F ++  +++R++H + V LLGYC     ++LIY++    SL  VL   K  +  E    LNW QR  I  G A+GL +LHE
Sbjct:   72 NFGNKALIGEGSYGRVFCGKFK-GEAVAIKKLDASSSEEPDSDFTSQLSVVSRLKHDHFVELLGYCLEANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHE 194          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  292 KHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQ--GKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLH 678
            K F    L  AT  F   N LGEG  G VY+ KL DG+   V+ +  SS     +++F    +  ++++H N+V LLG+C    E LL+YEYV + SL   +        L+W  R  I  G+AR L YLH
Sbjct:  401 KLFSAAELQLATNCFSEENLLGEGPLGSVYRAKLPDGQFAVVRNIPMSSLSLHEEEQFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAM-HDEVYKPLSWGLRLRIAIGVARALDYLH 530          
The following BLAST results are available for this feature:
BLAST of FC930683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
SSP_ARATH5.652e-1532.00Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y4372_ARATH9.642e-1534.18Probable LRR receptor-like serine/threonine-protei... [more]
RCH1_ARATH9.642e-1537.40LRR receptor-like serine/threonine-protein kinase ... [more]
KPEL_DROME9.642e-1534.27Serine/threonine-protein kinase pelle OS=Drosophil... [more]
Y1061_ARATH1.645e-1436.84Probably inactive leucine-rich repeat receptor-lik... [more]
TMKL1_ARATH1.645e-1436.42Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
Y3804_ARATH2.148e-1440.87Probably inactive leucine-rich repeat receptor-lik... [more]
RLK_ARATH2.148e-1432.59Probable LRR receptor-like serine/threonine-protei... [more]
Y2197_ARATH3.664e-1437.90Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
SRF2_ARATH3.664e-1437.40Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34010B09EF PostHarvC1 Citrus clementina cDNA clone C34010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930683 ID=FC930683; Name=FC930683; organism=Citrus clementina; type=EST; length=699bp
GACATAACAAGGAAACAGAAGAAAAAGAAACCTCAACTTCATCAAATAGT
CTACAAAATCCAAATATCAACATCCTCCTTCTCCCGTCACCACCATCTCC
TAAACGCTCACAAATTTTCTCAATCTTTTTTCACAGACTTAATTGTTTGA
TTGGCAACTTTCCATGAGCAGAGGAAGGACATGACCAAACCCAAGAAATT
CTTTGATGGTCTTTTGAAACACTTCAATCTTGGTTCTAGAAGAGAGGGTG
ACAACGAAGAAGATTTGGAGAAGATTGCTGCTCGGGAACAGAAGCACTTT
CCATTTGAAGCTTTAGTTTCTGCTACCAAAAATTTTCACCCTTCTAATAA
GCTTGGTGAGGGAGGCTTTGGACCTGTCTACAAGGGGAAGTTGGATGATG
GAAGAGAAATTGCAGTGAAGAAGCTGTCTCATAGTTCGAATCAAGGGAAG
AAGGAATTTGAGAATGAGGCTAAGTTGTTGGCTCGTGTGCAGCACCGGAA
TGTTGTGAATCTGTTGGGGTATTGTGCTCATGGAGCGGAGAAGCTATTGA
TTTATGAGTATGTCATAAACGAGAGTCTGGACAAGGTTCTCTTCAAATCG
AGAAGAAATCATGAGCTTAATTGGAAGCAAAGGTATGACATTATCACTGG
CATTGCTCGGGGATTGCTTTACCTTCATGAGGATTCACACACTGCATCA
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