FC930683

Overview
NameFC930683
Unique NameFC930683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  238 RREGDNEED-LEKIAAREQKH--FPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHE------LNWKQRYDIITGIARGLLYLH 678
            R+E    ED LE    + Q++  F +E +V AT +F    K+G GG+G VY+  L     +AVK L    +   K+F  E ++L++++H +++ LLG C       L+YEY+ N SL++ L K R N +      L W +R+ I   IA  L +LH
Sbjct:  394 RKEKQRLEDALEGGPLQRQQYMKFEWEEIVEATSSFSDELKIGVGGYGSVYRCNLHH-TTVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGS--LVYEYMHNGSLEERLMKRRPNVDTPQPPPLRWFERFRIAWEIASALYFLH 546          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  247 GDNEEDLEK----IAAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARV-QHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLH 678
            G   +D EK       R   +F  E L+ A+     +  LG+G FG  YK  L+D   + VK+L       KKEFE + +++ ++ QH N V LL Y     EKLL+Y+Y+   SL  ++  +R +  ++W+ R  I TG ++ + YLH
Sbjct:  319 GSGVQDPEKNKLFFFERCNHNFDLEDLLKAS-----AEVLGKGSFGTAYKAVLEDTTAVVVKRLREVV-ASKKEFEQQMEIVGKINQHSNFVPLLAYYYSKDEKLLVYKYMTKGSLFGIMHGNRGDRGVDWETRMKIATGTSKAISYLH 461          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  271 KIAAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARV------QHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRR--NHELNWKQRYDIITGIARGLLYLHED 684
            K+ A ++ +F  + +V         N LG G  G VYK ++ +G  IAVKKL   + +  K    ++ +LA V      +HRN+V LLG C +    +L+YEY+ N SLD +L    +       W   Y I  G+A+G+ YLH D
Sbjct:  700 KLTAFQRLNFTADDVVECLSK--TDNILGMGSTGTVYKAEMPNGEIIAVKKLWGKNKENGKIRRRKSGVLAEVDVLGNVRHRNIVRLLGCCTNRDCTMLLYEYMPNGSLDDLLHGGDKTMTAAAEWTALYQIAIGVAQGICYLHHD 843          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  169 QRKDMTKPKKFFDGLLKHFNLGSRREGDNEEDLEKIAAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHE--LNWKQRYDIITGIARGLLYLHEDSH 690
            Q+K    P+KF   +    N  S  EG N              F  E L+ A+     +  LG+G FG  YK  L+D   +AVK+L   +  GK++FE + +++  ++H NVV L  Y     EKL++Y+Y    S+  +L  +R  +   L+W+ R  I  G A+G+  +H++++
Sbjct:  299 QKKGGMSPEKFVSRMEDVNNRLSFFEGCNYS------------FDLEDLLRAS-----AEVLGKGTFGTTYKAVLEDATSVAVKRLKDVA-AGKRDFEQQMEIIGGIKHENVVELKAYYYSKDEKLMVYDYFSRGSVASLLHGNRGENRIPLDWETRMKIAIGAAKGIARIHKENN 456          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 48/128 (37.50%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  298 FPFEALVSATKNFHPSNKLGEGGFGP---VYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLY 672
            F F  L +AT NF   N + E G      VYKG+L + R IAVKK +  +    K+F  EA  + +++H  + NL+GYC  G E+LL+ E++ N++L K LF    N  + W  R  +   IA  L Y
Sbjct:   61 FSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRLQNRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLF-HWENQTIEWAMRLRVGYYIAEALDY 187          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  313 LVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLH 678
            L+ AT  F   N +     G  YK  L DG  + VK+LS      +K+F +E   L +++H N+V LLG+C    E LL+Y+++ N +    L+   +  +++W  R  +  G ARGL +LH
Sbjct:  288 LIEATNGFDSGNIVVSSRSGVSYKADLPDGSTLEVKRLSSCCELSEKQFRSEINKLGQIRHPNLVPLLGFCVVEDEILLVYKHMANGT----LYSQLQQWDIDWPTRVRVAVGAARGLAWLH 405          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  313 LVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRR-NHELNWKQRYDIITGIARGLLYLH 678
            L++AT NF   N       G  YK  L DG  +AVK+LS +   G+K+F +E   L  ++H N+V LLGYC    E+LL+Y++++N +L   L      +  L+W  R  I  G A+GL +LH
Sbjct:  294 LMAATNNFSSGNIDVSSRTGVSYKADLPDGSALAVKRLS-ACGFGEKQFRSEMNKLGELRHPNLVPLLGYCVVEDERLLVYKHMVNGTLFSQLHNGGLCDAVLDWPTRRAIGVGAAKGLAWLH 415          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  274 IAAREQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSS-NQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHEDSHTA 696
            I+A+E        ++ AT+N +    +G+G  G +YK  L   +  AVKKL  +    G      E + + +V+HRN++ L  +       L++Y Y+ N SL  +L ++     L+W  R++I  G A GL YLH D   A
Sbjct:  796 ISAQEGDGSLLNKVLEATENLNDKYVIGKGAHGTIYKATLSPDKVYAVKKLVFTGIKNGSVSMVREIETIGKVRHRNLIKLEEFWLRKEYGLILYTYMENGSLHDILHETNPPKPLDWSTRHNIAVGTAHGLAYLHFDCDPA 937          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  286 EQKHFPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKSRRNHELNWKQRYDIITGIARGLLYLHE 681
            + +H+ +E + +AT +F  + K+G G +G VYK  L      AVK L     Q  K+F+ E ++L++++H ++V LLG C       L+YEY+ N SLD  L        + W +R+ I   +A  L++LH+
Sbjct:  474 QYQHYTWEEIAAATSDFAENLKIGIGAYGSVYKCNLHHTTG-AVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPE--RGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHK 602          
BLAST of FC930683 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 52/153 (33.99%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  244 EGDNEEDLEKIAAREQKH--FPFEALVSATKNFHPSNKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFENEAKLLARVQHRNVVNLLGYCAHGAEKLLIYEYVINESLDKVLFKS---RRNHELNWKQRYDIITGIARGLLYLHEDS 687
            EGDN     KI   E K+  F  E L+ A+     +  LG+G FG  YK  L+D   I VK++   S   ++EFE + + +  ++H NV  L GY     EKL++Y+Y  + SL  +L      R    L W+ R +++ G ARG+ ++H  S
Sbjct:  286 EGDN-----KIVFFEGKNLVFDLEDLLRAS-----AEVLGKGPFGTTYKVDLEDSATIVVKRIKEVSVP-QREFEQQIENIGSIKHENVATLRGYFYSKDEKLVVYDYYEHGSLSTLLHGQKGLRDRKRLEWETRLNMVYGTARGVAHIHSQS 427          
The following BLAST results are available for this feature:
BLAST of FC930683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
PUB51_ARATH3.664e-1434.62U-box domain-containing protein 51 OS=Arabidopsis ... [more]
Y5516_ARATH4.785e-1433.56Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5148_ARATH4.785e-1434.25Probable leucine-rich repeat receptor-like protein... [more]
Y4374_ARATH4.785e-1430.11Probable inactive receptor kinase At4g23740 OS=Ara... [more]
Y4523_ARATH6.249e-1437.50Probable serine/threonine-protein kinase At4g35230... [more]
Y1699_ARATH6.249e-1433.61Probable LRR receptor-like serine/threonine-protei... [more]
Y1719_ARATH8.162e-1438.21Probable inactive receptor kinase At1g27190 OS=Ara... [more]
RPK1_IPONI1.066e-1330.99Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
PUB52_ARATH1.066e-1333.33U-box domain-containing protein 52 OS=Arabidopsis ... [more]
Y5332_ARATH2.375e-1333.99Probable inactive receptor kinase At5g53320 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010B09EF PostHarvC1 Citrus clementina cDNA clone C34010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930683 ID=FC930683; Name=FC930683; organism=Citrus clementina; type=EST; length=699bp
GACATAACAAGGAAACAGAAGAAAAAGAAACCTCAACTTCATCAAATAGT
CTACAAAATCCAAATATCAACATCCTCCTTCTCCCGTCACCACCATCTCC
TAAACGCTCACAAATTTTCTCAATCTTTTTTCACAGACTTAATTGTTTGA
TTGGCAACTTTCCATGAGCAGAGGAAGGACATGACCAAACCCAAGAAATT
CTTTGATGGTCTTTTGAAACACTTCAATCTTGGTTCTAGAAGAGAGGGTG
ACAACGAAGAAGATTTGGAGAAGATTGCTGCTCGGGAACAGAAGCACTTT
CCATTTGAAGCTTTAGTTTCTGCTACCAAAAATTTTCACCCTTCTAATAA
GCTTGGTGAGGGAGGCTTTGGACCTGTCTACAAGGGGAAGTTGGATGATG
GAAGAGAAATTGCAGTGAAGAAGCTGTCTCATAGTTCGAATCAAGGGAAG
AAGGAATTTGAGAATGAGGCTAAGTTGTTGGCTCGTGTGCAGCACCGGAA
TGTTGTGAATCTGTTGGGGTATTGTGCTCATGGAGCGGAGAAGCTATTGA
TTTATGAGTATGTCATAAACGAGAGTCTGGACAAGGTTCTCTTCAAATCG
AGAAGAAATCATGAGCTTAATTGGAAGCAAAGGTATGACATTATCACTGG
CATTGCTCGGGGATTGCTTTACCTTCATGAGGATTCACACACTGCATCA
back to top