FC930690

Overview
NameFC930690
Unique NameFC930690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930690 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 60/183 (32.79%), Postives = 88/183 (48.09%), Query Frame = 1 
Query:  151 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISI 681
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+    + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+      G  FSS   R+ LP+   K D +KAE+KNGVL +++
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTV 185
The following BLAST results are available for this feature:
BLAST of FC930690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS22M_PEA1.910e-1232.79Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionC34010C04EF PostHarvC1 Citrus clementina cDNA clone C34010C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930690 ID=FC930690; Name=FC930690; organism=Citrus clementina; type=EST; length=681bp
GATCGGTCGATTCTCTCAAGTGCTCAGAAAACAAAGTGAAAATAAATGGC
TGCAACATTATCTATCTCATCATCATCACCCTTGGTATCGCGCGAGGCCA
GGACCTCAATAGCTAGGAGAAATGTGGCGCCATGCTCGGTAACCTTACCG
GCAACGTCAAGGAAAGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGC
TGGTGGGGAGAACAAGGATACTTCGGTTGACGTCCATGTTAATTCCGGTA
ACCAAGGAACCCAAGTGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATT
TCACCTTTCGGTTTGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCA
GATGCTGGACACAATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGG
GGAGGAGCCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATC
AAAGAGGAGGAAAATGAGATCAAAATGAGATTTGACATGCCTGGACTCTC
TAAGGAGGATGTCAAAGTGTCGGTGGAAGATGAAGTCCTTGTCATTAAAG
GAGAGCACAGGGCAGAAGAAGCTGGAGGTGCAAGTTTTAGCTCTTACGAT
ACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGATAAGGTCAAGGCAGA
GCTCAAGAATGGTGTTCTTTACATTTCAATT
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