FC930695

Overview
NameFC930695
Unique NameFC930695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.251e-68
Identity = 139/253 (54.94%), Postives = 178/253 (70.36%), Query Frame = 1
Query:    4 GAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEE----------DKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            GA+VIL SHLGRPKG   +  L P+  RL ELLG  V  A+D IG EVE+ V ++ +G VLLLENVRF+ EEEKN+PEFA+KLA LA+LYVNDAFG+AHRAHASTEGVA++L+P+VAG L+QKEL+YL  A+ +P++P  AI+GG+KVS KI +I+++L KVD +L+GG M +TF KAQG  VG+S  E           D L L   L+ +AK +GV+ LLP D    DKF   A+    P   IP+G M L
Sbjct:   55 GARVILVSHLGRPKGFDDQLRLTPVAKRLGELLGQTVYKADDVIGPEVEEAVKKLEDGDVLLLENVRFYPEEEKNNPEFAQKLAGLAELYVNDAFGTAHRAHASTEGVARYLRPAVAGLLLQKELEYLGKALESPERPVLAIMGGAKVSDKIQLIQNMLTKVDSILIGGAMAYTFLKAQGVDVGASRCETSTTKKDGTTVDLLQLALDLLAEAKERGVTFLLPVDHRTNDKFGDLADPPVTPDANIPEGQMAL 307          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_BORHD (Phosphoglycerate kinase OS=Borrelia hermsii (strain DAH) GN=pgk PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.251e-68
Identity = 128/244 (52.46%), Postives = 181/244 (74.18%), Query Frame = 1
Query:    4 GAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            GA+V+L SHLGRPKG    KYSL P+  RLSELLG +VKM  DCIG+EV   V+ +  G V+LLEN+RF+++EE+N  +FAKKL+   D++VNDAFG+AHRAHAST G+A +L P+V GFLM+KE ++L   + NP+ PF +I+GGSKVS+KI V+ESLL K +++++GGGM +TF K +GHS+G SL+E + +D+  S ++KAK   V ++LP D ++A +F  D+    V +  IPDG +G+
Sbjct:   51 GARVVLMSHLGRPKGERNLKYSLMPVAKRLSELLGQDVKMLPDCIGDEVATAVSNMKNGDVVLLENIRFYRQEEENCNDFAKKLSQNGDIFVNDAFGTAHRAHASTAGLAAYL-PAVGGFLMEKEDEFLGKILKNPESPFVSIIGGSKVSSKIAVLESLLPKSNVMVIGGGMAYTFLKVEGHSIGKSLLENEYIDVAASFLKKAKELDVKVILPLDHIVASEFKEDSIPEYVDAIDIPDGKIGM 293          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_AQUAE (Phosphoglycerate kinase OS=Aquifex aeolicus GN=pgk PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.787e-68
Identity = 129/242 (53.31%), Postives = 173/242 (71.49%), Query Frame = 1
Query:    7 AKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            AKVIL SHLGRPK   PKYSL P+  RLS  +  EVK+A DC+GEEV+++V  + EG V+LLEN+RFHKEE + D  FA++LASL ++YV DAFG+ HR HAS   V KFLKP+V GFL++KE+ Y   A+  P++P  AI+GG+KVS+K+ VI++L+ +VD L +GG M FTF KA G+ VG+SLVE+D  D+   L++ AK   + L LP D VI  + + +  ++ VP   IPDGWMGL
Sbjct:   54 AKVILMSHLGRPKNRDPKYSLAPVAKRLSRYINKEVKLAPDCVGEEVKRIVNSMKEGDVVLLENLRFHKEETECDENFARELASLGEVYVADAFGTCHRKHASVYLVPKFLKPAVMGFLLEKEITYFEKAMVAPQRPVVAILGGAKVSSKLEVIKNLIRRVDKLFIGGAMAFTFLKAMGYKVGNSLVEDDLQDVARDLIDVAKKLEIKLYLPVDFVIGQEVSENTPTKVVPWQEIPDGWMGL 295          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_CLOBA (Phosphoglycerate kinase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pgk PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.640e-68
Identity = 134/247 (54.25%), Postives = 178/247 (72.06%), Query Frame = 1
Query:    1 HGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMA--NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            +GAKVIL SH+G+PKG   P+ SL P+  RLSELLG E+K A  N  +GE  +  VAE+ +G V+LLEN R+ KEE KN  EF+K+LASLA+++VNDAFG+AHRAH ST GV  ++  +V G+L+QKEL +L  AV  P+KPF AI+GG+KVS KI VI +LL+KVD +++GGGM +TF KAQG+ +G+SLVEED+LD    ++ KA+ KGV+ LLP D  +A +F  D  +       IP G MGL
Sbjct:   52 NGAKVILCSHMGKPKGEPKPELSLAPVAKRLSELLGKEIKFAPDNTVVGENAKAAVAEMKDGDVVLLENTRYRKEETKNGEEFSKELASLAEIFVNDAFGTAHRAHCSTVGVTDYIDTAVCGYLIQKELKFLGNAVETPEKPFVAILGGAKVSDKIAVINNLLDKVDTIIIGGGMAYTFLKAQGYEIGTSLVEEDRLDYAKEMIAKAEEKGVNFLLPVDHRVAAEF-KDVEATVTEDQNIPAGTMGL 297          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_THELT (Phosphoglycerate kinase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=pgk PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.754e-68
Identity = 136/244 (55.74%), Postives = 166/244 (68.03%), Query Frame = 1
Query:    7 AKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVP-STAIPDGWMGL 732
            AKVIL SHLGRPKG   PKYSLKP+   L  + G+ V      +GEEV++ V  +  G VLLLEN RFH  EEKND E AK  A LAD++VNDAFG+AHRAHAS  G+A F+ PSVAGFLM+KE+D+L      P  P+  ++GG+KVS KIGVI +LL K D LL+GG M+FTF KAQG  VGSSLVE DKLDL   ++E+AK K V ++LP D ++A K  A    +       I DGWMGL
Sbjct:   53 AKVILLSHLGRPKGSFDPKYSLKPIAEHLKNISGLNVIFVPHVVGEEVKEAVKNMKVGDVLLLENTRFHPGEEKNDQELAKAWAELADIHVNDAFGTAHRAHASNVGIANFI-PSVAGFLMEKEIDFLNKVTYEPDHPYVVVLGGAKVSDKIGVITNLLNKADKLLIGGAMMFTFLKAQGLKVGSSLVENDKLDLAKQILEQAKEKKVEIVLPVDAIVAQKIEAGVEKKTADLKDGIDDGWMGL 295          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_GEOMG (Phosphoglycerate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pgk PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.209e-68
Identity = 130/244 (53.28%), Postives = 171/244 (70.08%), Query Frame = 1
Query:    4 GAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            GAKVIL+SHLGRPKG   PKYS+ P   RLS LL  EV++A DCIG+EV+KM+  +  G VLLLENVRF++ EEKND +FAK LA+  ++Y+NDAF  +HRAHAS E + KF     AGFLM  E++Y   A+  P +P  AI+GG+KVS K+ V+ESL+ KVD +++GGGM FTF KA G++VG SLVEE+ L++  +   KA+ KGV   LP D V AD+F  +A ++      IP+ WM L
Sbjct:   53 GAKVILASHLGRPKGERKPKYSMAPAAKRLSRLLNKEVQLAPDCIGDEVKKMIDAMKPGEVLLLENVRFYEGEEKNDADFAKALANDCEIYINDAFAVSHRAHASVEAITKFFPVVAAGFLMNNEINYFEKAMQKPIRPLVAILGGAKVSGKLEVLESLVNKVDKIIIGGGMAFTFLKALGYNVGKSLVEEELLEIALTTYTKAREKGVKFYLPVDCVAADRFNPEAETKVTTIQEIPEEWMAL 296          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_ROSS1 (Phosphoglycerate kinase OS=Roseiflexus sp. (strain RS-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 140/244 (57.38%), Postives = 167/244 (68.44%), Query Frame = 1
Query:    1 HGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL--GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGW 723
            HGA VIL SHLGRPK  V     L P+V RL+ELL     +K      G   E    ++  G VL+LEN RF   EE ND   A++LA L D+YVNDAFGSAHRAHASTEGVA+FL P+VAGFLM+ EL  L GA+ NP +PF  I+GG+K+S KIGVIE+LL KVD LL+GGGM  TF  AQG+ +G SLVE D + +   L+EKA S+GV  +LPTDVVIAD F+ADAN R V    IP GW
Sbjct:   50 HGAAVILMSHLGRPKNKVVESMRLAPVVARLAELLPEAKAIKGTQATTGPAAEAAAQDLKPGEVLVLENTRFDPREEANDESMARELAKLGDVYVNDAFGSAHRAHASTEGVARFL-PAVAGFLMEAELAALQGALENPTRPFVTIIGGAKISDKIGVIENLLGKVDALLIGGGMANTFLLAQGYEMGDSLVEPDSVPVAKDLLEKAASRGVRFMLPTDVVIADAFSADANRRVVSVGDIPPGW 292          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_LEPBP (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 133/244 (54.51%), Postives = 175/244 (71.72%), Query Frame = 1
Query:    4 GAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            GAK+IL SHLGRPKG   PKYS+KP+   LSEL+  +V  +   IG +V KM   + EG +LLLEN+RFHKEEE+N   F K+LA LAD+YVNDAFG+AHRAHASTEGVA  L P+ AG LM+KE++ L G ++ P++PF AIVGGSKVS+K  ++++LLEKVD LL+GGGM +TF K++   VG SLVE +       L+++A  +GV L +P D +IAD F  +A ++ V    I DGWMG+
Sbjct:   51 GAKIILGSHLGRPKGGPEPKYSMKPVFDVLSELVKTKVSFSESVIGSDVVKMTNALGEGEILLLENLRFHKEEEENVASFCKELAKLADVYVNDAFGTAHRAHASTEGVAHLL-PAFAGLLMRKEIEVLSGLLAKPERPFVAIVGGSKVSSKFAILKNLLEKVDHLLIGGGMAYTFLKSRAVPVGKSLVEPEFESQAFQLIDRAGIQGVDLQIPVDHIIADAFDPNAKTKSVDKMGIIDGWMGM 293          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_LEPBA (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 133/244 (54.51%), Postives = 175/244 (71.72%), Query Frame = 1
Query:    4 GAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            GAK+IL SHLGRPKG   PKYS+KP+   LSEL+  +V  +   IG +V KM   + EG +LLLEN+RFHKEEE+N   F K+LA LAD+YVNDAFG+AHRAHASTEGVA  L P+ AG LM+KE++ L G ++ P++PF AIVGGSKVS+K  ++++LLEKVD LL+GGGM +TF K++   VG SLVE +       L+++A  +GV L +P D +IAD F  +A ++ V    I DGWMG+
Sbjct:   51 GAKIILGSHLGRPKGGPEPKYSMKPVFDVLSELVKTKVSFSESVIGSDVVKMTNALGEGEILLLENLRFHKEEEENVASFCKELAKLADVYVNDAFGTAHRAHASTEGVAHLL-PAFAGLLMRKEIEVLSGLLAKPERPFVAIVGGSKVSSKFAILKNLLEKVDHLLIGGGMAYTFLKSRAVPVGKSLVEPEFESQAFQLIDRAGIQGVDLQIPVDHIIADAFDPNAKTKSVDKMGIIDGWMGM 293          
BLAST of FC930695 vs. ExPASy Swiss-Prot
Match: PGK_BORGA (Phosphoglycerate kinase OS=Borrelia garinii GN=pgk PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.359e-67
Identity = 125/244 (51.23%), Postives = 181/244 (74.18%), Query Frame = 1
Query:    4 GAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSRXVPSTAIPDGWMGL 732
            GA+++L SHLGRP+G    KYSLKP+  +LSELLG +VKM +DCIG E+     ++ +G V+LLENVRF+ EEEKND  FAKKL+   D++VNDAFG+AHRAHAST GV+ +L PSV GFLM+KE  +L   + NP++PF +I+GGSKVS+KI V+ESLL K +++++GGGM +TF  ++G+S+G SL+E + +D+ +S ++KAK   V ++LP D ++AD F  ++    + S  IP+  +G+
Sbjct:   52 GARIVLISHLGRPEGKKNLKYSLKPVANKLSELLGQDVKMLSDCIGREIVNNTLQMKDGDVVLLENVRFYAEEEKNDKNFAKKLSENGDVFVNDAFGAAHRAHASTVGVSDYL-PSVGGFLMEKEDKFLGEVLKNPERPFVSIIGGSKVSSKIAVLESLLSKSNVVVIGGGMAYTFLHSKGYSIGKSLLESEYIDIASSFLKKAKELDVKVILPLDHIVADDFNKNSTPEYIDSFDIPENKIGM 294          
The following BLAST results are available for this feature:
BLAST of FC930695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_GLOVI1.251e-6854.94Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_BORHD1.251e-6852.46Phosphoglycerate kinase OS=Borrelia hermsii (strai... [more]
PGK_AQUAE2.787e-6853.31Phosphoglycerate kinase OS=Aquifex aeolicus GN=pgk... [more]
PGK_CLOBA3.640e-6854.25Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_THELT4.754e-6855.74Phosphoglycerate kinase OS=Thermotoga lettingae (s... [more]
PGK_GEOMG6.209e-6853.28Phosphoglycerate kinase OS=Geobacter metallireduce... [more]
PGK_ROSS11.806e-6757.38Phosphoglycerate kinase OS=Roseiflexus sp. (strain... [more]
PGK_LEPBP1.806e-6754.51Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_LEPBA1.806e-6754.51Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_BORGA2.359e-6751.23Phosphoglycerate kinase OS=Borrelia garinii GN=pgk... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010C09EF PostHarvC1 Citrus clementina cDNA clone C34010C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930695 ID=FC930695; Name=FC930695; organism=Citrus clementina; type=EST; length=733bp
CATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGT
TACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTC
TTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAA
AAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGT
GAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGC
TAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGGATCTGCCCAT
AGAGCCCATGCTTCCACTGAGGGTGTAGCTAAGTTCTTGAAGCCTTCTGT
GGCTGGTTTCCTTATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTT
CAAATCCCAAGAAACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCA
ACTAAGATCGGTGTTATTGAATCACTTTTGGAGAAGGTTGACATTCTATT
GCTCGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGACACTCTG
TTGGTTCATCCCTTGTTGAGGAAGACAAGCTTGATCTCGGTACGTCACTT
ATGGAGAAGGCCAAATCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGT
TGTTATTGCTGACAAGTTTGCTGCTGATGCCAACAGCAGGNTGGTGCCCA
GCACGGCAATTCCAGATGGTTGGATGGGCTTGG
back to top