FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.626e-40
Identity = 85/135 (62.96%), Postives = 104/135 (77.04%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAV 409
            LTEA+RRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSNLGAE+L S   G+  ++  R  V+  VR HFRPE LNR+DEI++F  LS   + +  R+Q++ V   LA+R +ALA+
Sbjct:  660 LTEAIRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLASQEDGE-DVEAVRPMVMNTVRGHFRPEFLNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMALAL 793          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 9.960e-40
Identity = 86/140 (61.43%), Postives = 103/140 (73.57%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V+  V+ HFRPE +NRLD+IVVF PL   Q+K   R+Q++ +  RLAERG+ L + DA
Sbjct:  662 LTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDDSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDA 801          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.960e-40
Identity = 77/138 (55.80%), Postives = 108/138 (78.26%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSN+G++H+    MG    +  ++ V+++V++HFRPE++NR+DE+VVF  L  + ++   ++Q+K +  RL ++ + LAV+DA
Sbjct:  666 LTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHI--QQMGIQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDA 801          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 85/139 (61.15%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V+  V+ HFRPE +NRLD+IVVF PL   Q+K   R+Q++ +  RLAERG+ L + D
Sbjct:  662 LTEAVRRRPYSLILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDGSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDD 800          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 83/137 (60.58%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSVVL DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLGA HL+     ++T    ++ V+  V +HFRPE +NR+DE VVF PL  + ++    +Q++ +  RLAERG  + ++D
Sbjct:  662 LTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGA-HLIQ-ENAEITYLAMKEMVMSVVSQHFRPEFINRIDETVVFHPLDQQHIRAIANIQLQRLIRRLAERGYQVTISD 796          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 82/137 (59.85%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +       +  Q  ++QV++ V KHFRPE LNR+DE VVF PL  + +K    +Q+  +A R+ E G  L V+D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYPLEVSD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 84/137 (61.31%), Postives = 99/137 (72.26%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +      ++  Q  ++QV+  V KHFRPE LNR+DE VVF PL  E +K    +Q+  +  RLAER   L V D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 77/138 (55.80%), Postives = 107/138 (77.54%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSN+G++H+    MG    +  ++ V+++V++HFRPE++NR+DE+VVF  L    ++   ++Q+K +  RL ++ + LAV+DA
Sbjct:  666 LTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHI--QQMGIQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLAVSDA 801          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.898e-39
Identity = 80/139 (57.55%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEA+RRRPY+VVLFDEVEKAH  VFN LLQVLDDGR+TD QGRTVDFRNTVIIMTSNLG+EH+L         +  R +VLQ  +K+FRPE LNR+D++++F  L   +L +  ++Q++ V   LA++ + L +T A
Sbjct:  675 QLTEAIRRRPYAVVLFDEVEKAHPEVFNVLLQVLDDGRITDSQGRTVDFRNTVIIMTSNLGSEHILDLAADDSRYEEMRQRVLQSAQKYFRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPA 813          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.943e-39
Identity = 81/140 (57.86%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM-QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRR+PYSVVL DE+EKAH  VFN LLQ+LDDGR+TD QGRTVDF+NTVIIMTSN+G+ HLL G+    ++ + +RD V+ ++R HFRPE LNR+DEI++F PL+  ++K      +K++  RLA+R + + +TDA
Sbjct:  667 QLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDA 806          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_CAUCR7.626e-4062.96Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPB_XANAC9.960e-4061.43Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_NEIMB9.960e-4055.80Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_XANCP1.699e-3961.15Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_HAEDU1.699e-3960.58Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_VIBVU2.219e-3959.85Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_VIBCH2.219e-3961.31Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_NEIMA2.219e-3955.80Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB2_THEEB2.898e-3957.55Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_BACCR4.943e-3957.86Chaperone protein clpB OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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