FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: HSP98_NEUCR (Heat shock protein hsp98 OS=Neurospora crassa GN=hsp98 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-28
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL--SGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLA--ERGVALAVTD 415
            QLTEA+RR+P+S++LFDEVEKA   V   LLQ++DDGR+TDGQGR VD RN +++MTSNLGAE+L   +   GK+     R+ V+  +R +F PE LNR+  IV+F+ L+  ++++   L++ ++  RL   +R V + V++
Sbjct:  691 QLTEALRRKPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRVVDARNCIVVMTSNLGAEYLSRPNAKDGKID-PTTRELVMNALRNYFLPEFLNRISSIVIFNRLTRREIRKIVELRIAEIQKRLQDNDRNVKIEVSE 831          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 71/139 (51.08%), Postives = 88/139 (63.31%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG-AEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTE VRR PYSV+L DE+EKA   V   LLQV+DDGRLTDGQG  +DFRNT+IIMTSN G     LSG   K  +Q   D++     ++FRPE  NRLD IV F  L+ + L +   L + DV   LA++ + L VT A
Sbjct:  569 LTERVRRNPYSVILLDEIEKADPQVLTLLLQVMDDGRLTDGQGSVIDFRNTIIIMTSNAGFGNEALSG--DKQRVQSLMDKLAPFFAQNFRPEFRNRLDNIVEFSHLTKQDLSQIVDLMLADVQKTLAKKSIKLEVTKA 705          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGA (Chaperone protein clpB OS=Mycoplasma gallisepticum GN=clpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.006e-28
Identity = 59/131 (45.04%), Postives = 91/131 (69.47%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGV 397
            L++A+R +PY+VVLFDE+EKAH  V N LLQ+LDDG+LTD   R V+F+NT+IIMTSN+GAEH+L+    K          ++E+++  RPELLNR+DE++ F  L+ + L    +  + D++ R+ ++ +
Sbjct:  522 LSDAIRTKPYAVVLFDEIEKAHPDVLNILLQILDDGQLTDNHNRLVNFKNTIIIMTSNIGAEHILANNPAK---------TIEELKRKIRPELLNRIDELITFKALNDKDLSAIAQKLLSDLSDRIKKQQI 643          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_HELPY (Chaperone protein clpB OS=Helicobacter pylori GN=clpB PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPL-SHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR+PYSVVL DEVEKAH  VFN LLQVLD+G LTD +G  VDF+NT++I+TSN+ +  LL   + +   Q A   + + +R+ F+PE LNRLDEI+ F+ L SH  +   G L  +++  +  ERG+ + + +
Sbjct:  661 QLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEENLSEAEKQKA---IKESLRQFFKPEFLNRLDEIISFNALDSHAVINIVGIL-FENIQKKALERGINITLDE 795          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_HELPJ (Chaperone protein clpB OS=Helicobacter pylori J99 GN=clpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR+PYSVVL DEVEKAH  VFN LLQVLD+G LTD +G  VDF+NT++I+TSN+ +  LL   + +   Q A   + + +R+ F+PE LNRLDEI+ F+ L    +     +  ++V  +  ERG+ + + +
Sbjct:  661 QLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEEDLSEADKQKA---IKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENVQKKALERGINITLDE 795          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.745e-28
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM---GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLA--ERGVALAVTD 415
            QLTE +RRRPYSV+LFDE+EKA   V   LLQVLDDGR+T GQG+ VD +N VIIMTSNLGAE+L +      GK+     R+ V+  +R  FRPE LNR+  IV+F+ L    ++     ++ +V  RL    R + + V+D
Sbjct:  677 QLTEQLRRRPYSVILFDEIEKAAPEVLTVLLQVLDDGRITSGQGQVVDAKNAVIIMTSNLGAEYLTTDNESDDGKID-STTREMVMNSIRGFFRPEFLNRISSIVIFNRLRRVDIRNIVENRILEVQKRLQSNHRSIKIEVSD 818          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPE_STRPN (ATP-dependent Clp protease ATP-binding subunit clpE OS=Streptococcus pneumoniae GN=clpE PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 66/138 (47.83%), Postives = 84/138 (60.87%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VR  PYS++L DEVEKAH  V +  LQVLDDGRLTDGQGRTV F++ +IIMTSN G     + +      +   + VL E+   F PE +NR D I+ F  LS + L +   L + DV  RL+   + L VTD
Sbjct:  543 QLTEKVRHNPYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKTEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDGIIEFKALSKDNLLQIVELMLADVNKRLSSNNIRLDVTD 680          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL-QEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR PYS+VL DE+EKAH  V +  LQ+++DGRLTD QGRTV F++TVIIMTSN GA    + +  +    V  +Q L   +   F+PE LNR D I+ F  L  E L +   L + ++   LAERG++L VTD
Sbjct:  502 QLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGAGEKQTKVGFQSDDSVIEEQTLIDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTD 640          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: HS104_YEAST (Heat shock protein 104 OS=Saccharomyces cerevisiae GN=HSP104 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAE 388
            LT  ++ +PYSV+LFDEVEKAH  V   +LQ+LDDGR+T GQG+T+D  N ++IMTSNLGAE  ++   G    +  ++ V+  VR+HFRPE LNR+  IV+F+ LS + + +   +++K++  R  +
Sbjct:  671 LTNQLQYKPYSVLLFDEVEKAHPDVLTVMLQMLDDGRITSGQGKTIDCSNCIVIMTSNLGAE-FINSQQGSKIQESTKNLVMGAVRQHFRPEFLNRISSIVIFNKLSRKAIHKIVDIRLKEIEERFEQ 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STRP6 (Probable ATP-dependent Clp protease ATP-binding subunit OS=Streptococcus pyogenes serotype M6 GN=clpC PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTE VRR PY++VL DE+EKA   +   LLQVLDDGRLTDGQG T++F+NTVII TSN G         G+   + +   ++  +  +FRPE LNR + I+ F+ L  E L+E   L + +V    A++G++L + D
Sbjct:  510 LTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTINFKNTVIIATSNAG--------FGQQDTETSESNIMDRIAPYFRPEFLNRFNSIIKFNHLQKENLEEIVDLMLAEVNQTTAKKGISLTIAD 638          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
HSP98_NEUCR1.762e-2845.77Heat shock protein hsp98 OS=Neurospora crassa GN=h... [more]
CLPL_LACLA2.301e-2851.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_MYCGA3.006e-2845.04Chaperone protein clpB OS=Mycoplasma gallisepticum... [more]
CLPB_HELPY6.696e-2848.92Chaperone protein clpB OS=Helicobacter pylori GN=c... [more]
CLPB_HELPJ6.696e-2847.10Chaperone protein clpB OS=Helicobacter pylori J99 ... [more]
HS104_SCHPO8.745e-2848.25Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPE_STRPN1.492e-2747.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPE_BACSU1.492e-2748.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
HS104_YEAST1.948e-2745.31Heat shock protein 104 OS=Saccharomyces cerevisiae... [more]
CLPC_STRP62.544e-2744.53Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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