FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.866e-24
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 199
            QLTEAVRRRPYSVVL DE+EK H  VFN LLQVLDDGRLTDGQGRTVDFRN ++IMTSNLG++ ++
Sbjct:  664 QLTEAVRRRPYSVVLLDEIEKVHPDVFNFLLQVLDDGRLTDGQGRTVDFRNVILIMTSNLGSQFMV 729          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPA_RHOBL (ClpA homolog protein OS=Rhodopseudomonas blastica PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.559e-21
Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE----VRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            LT+ V + P+ V+L DE+EKAH  V+N LLQV+D G+LTD  GR VDFRN ++IMTSN+GA       M K  +   R++   E    V + F PE  NRLD ++ F PL  E + +     +  +  +L +R V + +T
Sbjct:  579 LTDGVDQHPHCVLLLDEIEKAHPDVYNILLQVMDHGKLTDHNGRAVDFRNVILIMTSNVGAAD-----MAKEAIGFGRERRTGEDTAAVERTFTPEFRNRLDAVISFAPLGREIILQVVEKFVLQLEAQLIDRNVHIELT 713          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR----KHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRL 382
            LTEAVRR+PYSVVL DEVEKAH  V     QV D G + DG+GR +DF+NT+I++T+N G E +++ +     +    + + + +R    K F P LL RL  I  + PLS + LK   RLQ+  +  R+
Sbjct:  697 LTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTE-MIASLCADPELMPEPEAIAKSLREPLLKIFPPALLGRLVTIPYY-PLSDDMLKAISRLQLGRIKKRV 824          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.550e-19
Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQ----EVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRL 382
            LTEAVRR+PYSVVL DE+EKAH  V     QV D G++ DG+GR +DF+NT++++TSN+G+E LLS +         +D +L     E+ K F    L R+  ++ + PL    L+   RL +  +  RL
Sbjct:  683 LTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSE-LLSNLFADPDTAPDQDGILSALQPELLKVFPAAFLGRV-TVIPYLPLQQSALQHIVRLHLDRIGQRL 810          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_MOUSE (Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLS--------------------GMMGKVTM-QVARDQVLQEVRK-HF-RPELLNRLDEIVVFDPLSHEQL 337
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L                      M  K+T+ +  ++ V++ + K HF R E L R++EIV F P  H +L
Sbjct:  408 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQMSDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSEL 546          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_RAT (Caseinolytic peptidase B protein homolog OS=Rattus norvegicus GN=Clpb PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLSGMMGKVTMQVARDQVLQE------------------------VRKHF-RPELLNRLDEIVVFDPLSHEQL 337
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L   + +  ++++R+++ +                         ++ HF R E L R++EIV F P  H +L
Sbjct:  408 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHAL--QLRQEALEMSRNRIAENLGDVQISDKITISKNFKENMIRPILKAHFRRDEFLGRINEIVYFLPFCHSEL 546          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_HUMAN (Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLSGMMGKVTMQVARDQVLQE------------------------VRKHF-RPELLNRLDEIVVFDPLSHEQL 337
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L   + +  ++++R+++ +                         ++ HF R E L R++EIV F P  H +L
Sbjct:  438 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHAL--QLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSEL 576          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BOVIN (Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLSGMMGKVTMQVARDQVLQE------------------------VRKHF-RPELLNRLDEIVVFDPLSHEQL 337
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L   + +  ++++R+++ +                         ++ HF R E L R++EIV F P  H +L
Sbjct:  408 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHAL--QLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSEL 546          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.679e-16
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   29 PYS--VVLFDEVEKAHISVFNTLLQVLDDG--RLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQ---VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            PY+  +VLFDEVEKA  +V   LLQVLD+G  RL +GQ + + FRN+ + +TSNLG+  +       L  +  +V +   R     V + + K F PE  NR+DE V+ D    +  ++  RL+++ +  RLA RG+ + V D+
Sbjct:  146 PYTPGIVLFDEVEKADPTVLRALLQVLDNGELRLANGQQK-ISFRNSYVFLTSNLGSAAVAERRRSHLRQLADRVRIDRPRHGHHLVQRALEKFFDPEFFNRIDETVILDEFDDQTAEQVTRLEIELITTRLARRGIDVEVDDS 288          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_PROFR5.866e-2478.79Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPA_RHOBL3.559e-2140.71ClpA homolog protein OS=Rhodopseudomonas blastica ... [more]
CLPV1_PSEAE5.139e-2043.08Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]
CLPB_YEREN2.550e-1941.54Chaperone protein clpB OS=Yersinia enterocolitica ... [more]
CLPB_MOUSE1.547e-1638.13Caseinolytic peptidase B protein homolog OS=Mus mu... [more]
CLPB_RAT2.639e-1634.75Caseinolytic peptidase B protein homolog OS=Rattus... [more]
CLPB_HUMAN2.639e-1634.75Caseinolytic peptidase B protein homolog OS=Homo s... [more]
CLPB_BOVIN2.639e-1634.75Caseinolytic peptidase B protein homolog OS=Bos ta... [more]
ADPR_RHOER7.679e-1637.50ATP-dependent protease ATP-binding subunit-like pr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
back to top