FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.456e-39
Identity = 82/139 (58.99%), Postives = 105/139 (75.54%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM-GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR+PYSVVLFDEVEKAH  VFNTLLQ+LDDGRLTD  GRTVDFRNT+IIMTSN+G+ ++L G+  G   +   R++V++E+R+HFRPE LNR+DE V+F PL   Q+     L +  +  RLAER + + + D
Sbjct:  666 QLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRNTIIIMTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGD 804          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.101e-38
Identity = 88/143 (61.54%), Postives = 109/143 (76.22%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARD----QVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPYSVVL DEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++I+TSNLG++  LSG  G    Q + +    QVL+ VR  F+PE LNRLD++VVF  L+ ++L+   +LQ+  +A RLA+R + L VTDA
Sbjct:  665 QLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQ-FLSG-HGPAEPQTSEEEKKRQVLEVVRASFKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDA 805          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSVVL DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSNLG++  L   M   +  V +  V QEV+ HFRPE LNR+DE+VVF  L    ++   R+Q++ +A RLA   + L ++D
Sbjct:  665 LTEAVRRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNLGSQ--LIQQMASESPDVIKGAVWQEVKTHFRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISD 799          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 77/138 (55.80%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR PYSV+LFDE+EKAH  VFN  LQ+LDDGRLTD +G+TVDF+NT+IIMTSN+G+ +LL    G+      R+ V+ E++  F+PE LNR+D+I++F PLS E +K+   + ++DV  RL ER + L VTD
Sbjct:  668 QLTEAVRRNPYSVILFDEIEKAHDDVFNLFLQILDDGRLTDNKGKTVDFKNTIIIMTSNIGSGYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTD 805          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG++H+ S M GK   +V ++ V  E++  FRPE LNR+DE+VVF  L  + ++   R+Q+K +  RL ++ + L V+DA
Sbjct:  668 LTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQS-MAGK-PYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDA 803          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG++H+ S M GK   +V ++ V  E++  FRPE LNR+DE+VVF  L  + ++   R+Q+K +  RL ++ + L V+DA
Sbjct:  668 LTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQS-MAGK-PYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDA 803          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG++H+ S M GK   +V ++ V  E++  FRPE LNR+DE+VVF  L  + ++   R+Q+K +  RL ++ + L V+DA
Sbjct:  668 LTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQS-MAGK-PYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDA 803          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 79/140 (56.43%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM-QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRR+PYSV+L DE+EKAH  VFN LLQ+LDDGR+TD QGRTVDF+NTVIIMTSN+G+ HLL G+    ++ + +R+ V+ ++R HFRPE LNR+DEI++F PL+  ++K      +K++  RLA+R + + +TDA
Sbjct:  667 QLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEDDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDA 806          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 83/139 (59.71%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPY+ VLFDEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++I+TSNLGA                R+Q++  V+  F+PE +NRLD+IVVFDPLS EQL     +Q+  +A RL++R + L V+DA
Sbjct:  664 QLTEAVRRRPYTTVLFDEVEKAHPDVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGAGG-------------TREQMMDAVKMAFKPEFINRLDDIVVFDPLSQEQLASIVEIQISQLAERLSDRRLTLRVSDA 789          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 82/139 (58.99%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPY+VVLFDEVEKAH  VF+ LLQVLD+GRLTDGQGRTVDFRNTV+I+TSNLGA                +D+++  V++ F+PE +NRLD++V+FDPLS EQL     +Q+  +A RLA R + LAV+D+
Sbjct:  662 QLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTVLILTSNLGAGG-------------TKDEMMDAVKRAFKPEFVNRLDDVVIFDPLSQEQLTHIVEIQIAQLAQRLAARRLTLAVSDS 787          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_DESVH6.456e-3958.99Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB1_STRAW1.101e-3861.54Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPB_RALSO1.438e-3859.85Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_CLOPE1.438e-3855.80Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_BORPE1.438e-3860.14Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORPA1.438e-3860.14Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR1.438e-3860.14Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_BACC11.438e-3856.43Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_COREF2.453e-3859.71Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_CORDI2.453e-3858.99Chaperone protein clpB OS=Corynebacterium diphther... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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