FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            QLTEAVRRRPYSVVL DEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++++TSNLG+++L    +G    +  R QV++ VR  F+PE LNRLD++V+F  L  ++L     LQ+  +A RLA+R ++L VT
Sbjct:  661 QLTEAVRRRPYSVVLLDEVEKAHPGVFDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYL----VGSAPEEEKRRQVMEVVRSSFKPEFLNRLDDLVIFSALDEDELARIAGLQIAGLARRLADRRLSLDVT 793          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V  +FRPE +NR+DE+VVF PL  + +    ++Q+K +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V  +FRPE +NR+DE+VVF PL  + +    ++Q+K +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V  +FRPE +NR+DE+VVF PL  + +    ++Q+K +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V  +FRPE +NR+DE+VVF PL  + +    ++Q+K +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 79/137 (57.66%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V ++FRPE +NR+DE+VVF PL  + +    ++Q++ +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 79/137 (57.66%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V ++FRPE +NR+DE+VVF PL  + +    ++Q++ +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 79/138 (57.25%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRRRPY+V+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSN+G+  +L         +  +  V+ E+R  FRPE LNR+D+I+VFD L+ + L+    +Q+  +  RLAER + L +T+
Sbjct:  651 QLTEAVRRRPYAVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNIGSPLILEMQQRGEDAETIKSAVMDELRGEFRPEFLNRVDDIIVFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTE 788          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 78/140 (55.71%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM-QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRR+PYSV+L DE+EKAH  VFN LLQ+LDDGR+TD QGRTVDF+NTVIIMTSN+G+ HLL G+    ++ + +R+ V+ ++R HFRPE LNR+DEI++F PL+  ++K      +K++  RLA+R + + +T+A
Sbjct:  667 QLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVKLTEA 806          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 80/136 (58.82%), Postives = 98/136 (72.06%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     +  V+  V  HFRPE +NR+DE+VVF PL    L     +Q++ +  RL ERG  + +T
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQEHFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKIT 796          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_STRAL3.204e-3859.12Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
CLPB_SHIFL4.184e-3858.39Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_ECOLI4.184e-3858.39Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL64.184e-3858.39Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO574.184e-3858.39Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_SALTY5.465e-3857.66Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI5.465e-3857.66Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_DEIRA5.465e-3857.25Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_BACAN5.465e-3855.71Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB_YERPE7.138e-3858.82Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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