FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 82/139 (58.99%), Postives = 101/139 (72.66%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTE VRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V++ V+ HFRPE +NRLD+IVVF PL   Q+K+  R+Q++ +  RLAE  + L + D
Sbjct:  662 LTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDD 800          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 82/137 (59.85%), Postives = 98/137 (71.53%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG++ +  G  G ++    +  V+  V   FRPE LNR+DE VVF PL  E +K    +Q+  +  RLAE+   L +TD
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDIIQEG-FGHLSYSEMKSAVMNVVTHSFRPEFLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 80/138 (57.97%), Postives = 101/138 (73.19%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG++ +     G +  +  ++ VL+ V ++FRPE +NR+DE VVF PL  E +K    +Q++ +  RL E+   L V ++
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDRIQEN-FGNLNYEGIKNMVLEVVSQYFRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQES 798          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+ G   +   ++ +  V+  V +HFRPE +NR+DE VVF PL  E ++    +Q++ +A R+  RG  L  TDA
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQGNKDESYSEM-KALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDA 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.217e-37
Identity = 78/139 (56.12%), Postives = 106/139 (76.26%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-MGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRRRPYSV+LFDE+EKAH  VFN  LQ+LDDGRLTDGQGR VDF+NT+IIMTSN+G+E++L+   MG +     ++++ Q +R +FRPE LNR+DEI+ F+ L  E +++   +Q++ VA RL  R + L V+D
Sbjct:  665 QLTEAVRRRPYSVILFDEIEKAHQDVFNVFLQILDDGRLTDGQGRVVDFKNTIIIMTSNIGSEYILTAKDMGSI-----KEEINQILRDNFRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSD 798          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37
Identity = 82/139 (58.99%), Postives = 100/139 (71.94%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTE VRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V+  V+ HFRPE +NRLD+IVVF PL   Q+K+  R+Q++ +  RLAE  + L + D
Sbjct:  662 LTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD 800          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 81/137 (59.12%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPY V+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAE+L++ +     ++  RD V+  VR  FRPE LNR+DEI++F  L  E +     +QM+ +   L++R + L + D
Sbjct:  662 LTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEYLVN-LGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLED 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 82/138 (59.42%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSNLG+E L++   G+ T  V R+QV+  VR HFRPE LNR+DEI++F  L   ++     +Q   +   L +R + L +  A
Sbjct:  663 LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQPEGEDTSAV-REQVMGMVRGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGA 799          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 72/138 (52.17%), Postives = 105/138 (76.09%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEA+RRRPY+VVLFDE+EKAH  VFN  LQ+LDDGR+TD QGRTVDF+NT+IIMTSN+G++++L             ++V++ +R HFRPE LNR+DE ++F  L  +QL++  +LQ++ +  RL++R + L++T+
Sbjct:  666 QLTEAIRRRPYAVVLFDEIEKAHPDVFNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYILDVAGDDSRYSEMYNRVMEAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTE 803          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 75/139 (53.96%), Postives = 100/139 (71.94%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QL+EAVRR PYSVVL DEVEKAH  VFN LLQVLDDGR+TD QGRTVDFRNTVI+MTSN+G+EH+L         +  R++V+  +R HFRPE LNR+D+ ++F  LS  ++    R+Q+K V   L ++ ++  ++ A
Sbjct:  670 QLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRNTVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPA 808          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_XYLFA7.138e-3858.99Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_SHEON7.138e-3859.85Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_PHOPR7.138e-3857.97Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_HAEIN7.138e-3859.42Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_TREDE1.217e-3756.12Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_XYLFT1.590e-3758.99Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_BRUSU2.712e-3759.12Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRAJA3.542e-3759.42Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB1_THEEB3.542e-3752.17Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB1_ANASP4.626e-3753.96Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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