FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ ++    G +     +D V+  V  +FRPE +NR+DE VVF PL    L     +Q++ +  RL ERG  + +T
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-MIQERFGSLNYDEMKDIVMGIVSHNFRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTIT 796          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 80/139 (57.55%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPYSVVLFDEVEKA+  +F+ LLQVLDDGRLTDGQGRTVDF+NT++IMTSNLG++ L++  M        +  V+  V  +F+PE LNRLD+IV+F PL+ E+L     +Q+  V+ RL +R + L VTD+
Sbjct:  672 QLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGRLTDGQGRTVDFKNTILIMTSNLGSQFLVNEDM---DADAKKKAVMDAVHMNFKPEFLNRLDDIVMFHPLTREELGGIVDIQVAGVSQRLTDRRITLDVTDS 807          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 77/145 (53.10%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEA+RR+PYSVVLFDE+EKAH  VFN LLQVLDDGRLTD +GR V+F+NT+IIMTSN+G+ ++      LSG   +  ++  + +V+  ++K+ RPE LNR+DE ++F PL+  ++++   LQ+K V   LAE GV L +TDA
Sbjct:  659 QLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSYIQSQMEKLSGSNKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDA 803          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDF+NT+IIMTSNLG+E  ++ M     +   R+ V++ VR HFRPE LNR+D+I++F  L  +++     +Q+K +   LA+R + L + +
Sbjct:  664 LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSE-FMTQMGDNDDVDSVRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDE 799          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.031e-36
Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEA+RRRPYSV+L DE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG++ L+    G+      +D V++ V +HFRPE +NR+DE VVF  L  EQ++    +Q+  +  RL E+   L ++D
Sbjct:  664 LTEAIRRRPYSVILLDEIEKAHNDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSD-LIREFSGE-NYDKMKDAVMEVVAQHFRPEFINRIDEAVVFHSLKKEQIRNIAIIQIDRIKKRLKEKDYQLTISD 798          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.031e-36
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRRRPY V+LFDE+EKAH  VFN LLQVLDDGRLTDGQG TVDFRNTVIIMTSNLGAE+L++ +     ++  RD V+  VR  FRPE LNR+DEI++F  L  E +     +QM+ +   L++R + L + D
Sbjct:  662 LTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNLGAEYLVN-LGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLED 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 81/138 (58.70%), Postives = 98/138 (71.01%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+ HL+      +     ++ V+  V +HFRPE +NR+DE VVF PL  E ++E   +Q+  +  R+   G  L  TDA
Sbjct:  661 LTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGS-HLIQ-ENSTLDYPSMKELVMSVVGQHFRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDA 796          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 75/139 (53.96%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPY+VVLFDE+EKAH  VFN LLQVLDDGR+TD QGRT+DF+N VIIMTSN+G++ +L         +  R++V++ ++ HFRPE LNR+D+I++F  L  +QL    +LQ+  +  RLA+R + L +++A
Sbjct:  668 QLTEAVRRRPYAVVLFDEIEKAHNDVFNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAILRLGGNDAYYEQMREEVMRAMQVHFRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEA 806          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 79/133 (59.40%), Postives = 99/133 (74.44%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVAL 403
            LTEAVRRRPY V+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+I+MTSNLG+E+L++   G+ T  V R+QV+  VR HFRPE LNR+DEI++F  L   ++     +Q   +   L +R + L
Sbjct:  663 LTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNLGSEYLVNQPEGEDTGAV-REQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVL 794          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 79/138 (57.25%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRRRPYS+VLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG++ +     G       +  V + +++ F+PE LNR+DEIV++  L  EQ+K+   +Q++ +  RLA+R + L ++D
Sbjct:  667 QLTEAVRRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQWI--QQYGSSDYARMKAMVTETLKEGFKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSD 802          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_PHOLL7.892e-3758.09Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_BIFLO7.892e-3757.55Chaperone protein clpB OS=Bifidobacterium longum G... [more]
CLPB_BACTN7.892e-3753.10Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB_AGRT57.892e-3756.20Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_COXBU1.031e-3656.93Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_BRUME1.031e-3658.39Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_PASMU1.346e-3658.70Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_GLOVI1.346e-3653.96Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_RHOPA1.758e-3659.40Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_GEOSL1.758e-3657.25Chaperone protein clpB OS=Geobacter sulfurreducens... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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