FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSN+G++ + +  M     QV +  V+ EV+  FRPE +NR+DE+VVF  L  + ++   R+Q+K +  RLA+  ++L ++D
Sbjct:  666 LTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQQIQA--MATDDYQVIKLAVMAEVKTQFRPEFINRIDEVVVFHGLDEKHIQSIARIQLKSLENRLAKLELSLQISD 800          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 72/138 (52.17%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEA+RRRPYSV+LFDE+EKAH  VFN +LQ+LDDGRLTD QG  VDF+NT+IIMTSNLG++++L         +  R +V+  +R++FRPE LNR+DE ++F  L   +L+   ++Q++ +A RL E+ + L +TD
Sbjct:  667 QLTEAIRRRPYSVILFDEIEKAHGDVFNVMLQILDDGRLTDAQGHVVDFKNTIIIMTSNLGSQYILDVAGDDSRYEEMRSRVMDVMRENFRPEFLNRVDETIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTLKLTD 804          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 75/139 (53.96%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QL+EA+RR PY+VVLFDEVEKAH  VFN LLQVLDDGR+TD QGRT+DF N VI+MTSN+G++ +L     + ++     +VL  +R+HFRPE LNR+D+ ++F PLS  QL++   +Q++ +   LAE+ +AL VT A
Sbjct:  673 QLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTIDFCNAVIVMTSNIGSQFILEMGEEEASLDAVELKVLGALRQHFRPEFLNRIDDTILFQPLSRGQLQQIVDIQLQRLKRLLAEQAIALNVTPA 811          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAV 409
            LTEAVRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSNLGAE+L++ +     +   RD+V+  VR  FRPE LNR+DE+++F  L  + +     +Q K +   L +R + L++
Sbjct:  662 LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLVN-LGEDQDVDAVRDEVMGVVRASFRPEFLNRVDEVILFHRLRRKDMDRIVEIQFKRLESLLVDRKITLSL 795          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 77/139 (55.40%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV-ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR PYS+VLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDF+NT++IMTSNLG+E LL+G+  +  +      QV+Q V+  F+PE LNR+D+I++F PL    ++E     +  ++ RL +R + L ++D
Sbjct:  663 QLTEAVRRNPYSIVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTILIMTSNLGSELLLAGVDDQGHLSADTHQQVMQLVQSRFKPEFLNRIDDIIMFTPLQLGAIEEIVVKLIDRLSARLQDREITLKISD 801          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.917e-36
Identity = 80/138 (57.97%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRRRP++VVLFDEVEKAH +V+N LLQVLDDGRLTD +GRTVDF NT+I+MTSNLG+EHLL+      + +V R+ VL  VR +FRPEL+NRLD+IVVF  L  E L+      +  V  RL   G ++ + D
Sbjct:  659 QLTEPVRRRPHAVVLFDEVEKAHPNVYNVLLQVLDDGRLTDSRGRTVDFSNTIIVMTSNLGSEHLLNPEETNESYEVLRENVLAAVRSYFRPELINRLDDIVVFRRLRTEDLRGVVDNLIAGVNERLKSSGFSVLLDD 796          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.917e-36
Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGR+TDGQGRTVDF+NTVI+MTSNLG++ ++  M G    QV +  V+ EV+ +FRPE +NR+DE+VVF  L    +K   R+Q+ ++  RLA+  + L V++
Sbjct:  667 LTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSQ-MIQQMSGD-DYQVIKLAVMGEVKTYFRPEFINRIDEVVVFHALGEAHIKSIARIQLSNLGKRLAQMEMKLVVSE 801          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTE+VRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDF+NT+IIMTSNLGAE+ L+ +         RDQV++ VR  FRPE LNR+DEI++F  L   ++     +Q++ +   L++R + L + D
Sbjct:  664 LTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTSNLGAEY-LTALGENEDSDAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELED 799          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 80/139 (57.55%), Postives = 101/139 (72.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPY+VVLFDEVEKAH  VF+ LLQVLD+GRLTDGQGRTVDFRNT++I+TSNLGA                R+Q++  V+  F+PE +NRLD++V+FD LS EQL     +Q+K +  RLA R + L V+D+
Sbjct:  664 QLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTILILTSNLGAGG-------------TREQMMDAVKMAFKPEFVNRLDDVVIFDRLSPEQLTSIVDIQIKQLTDRLAGRRLNLRVSDS 789          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_CHRVO1.758e-3655.47Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB2_SYNY31.758e-3652.17Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB2_SYNE72.296e-3653.96Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_RHILO2.999e-3657.78Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB_LACPL2.999e-3655.40Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
CLP_TRYBB3.917e-3657.97Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_NITEU3.917e-3656.20Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_RHIME6.681e-3656.93Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_CORGL6.681e-3657.55Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPC_STAAW8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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