FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKV--------TMQVARDQVLQE-----VRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDEVEKAH  VFN  LQ+LDDGRLTDGQGR VDFRNT+IIMTSN+G+EH+LS    +           Q   +Q L E     +  +FRPE LNR+DE+++F  L+ + ++    +Q++ V  RL  R + L V DA
Sbjct:  665 QLTEAVRRRPYSVLLFDEVEKAHQDVFNIFLQILDDGRLTDGQGRVVDFRNTIIIMTSNIGSEHILSARESRTHTSDLPVPETQSTEEQTLPEQIRGLLHTYFRPEFLNRIDEVLIFKRLTRKHIRLITDIQLQMVVERLESRHIKLRVRDA 816          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 69/137 (50.36%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            QLTEAVRRRPYSV+LFDE+EKAH  VFN +LQ+LDDGR+TD +GRTVDF+NT++I+TSN+G++++L         +  R +V + +R +FRPE LNR+DE ++F  L  +QL++  R+Q+  +  RL++R ++L+++
Sbjct:  667 QLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSNIGSQYILDVAGDDSRYEEMRSRVTEALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMS 803          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPC_STAAS8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB8.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA88.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA38.725e-3653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_TREPA8.725e-3652.63Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB1_SYNE71.488e-3550.36Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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