FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNTVIIMTSN+GA+ L         G       +  R  +++E++  FRPE LNR+D+I+VF  L+ ++LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNTVIIMTSN+GA+ L         G       +  R  +++E++  FRPE LNR+D+I+VF  L+ ++LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            LTEA+RR+PYSVVL DEVEKAH  VFN LLQVL+DGRLTD  GRTVDFRNTV++MTSNLG+  +  L+G       +  R  V+  V  HFRPE +NR+DE+VVF+PL+ EQ+     +Q+  +  RLAER ++L ++
Sbjct:  662 LTEAIRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNLGSAQIQELAG-----DREAQRAAVMDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELS 794          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 68/138 (49.28%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE +RRRPY+V+LFDE+EKAH  VFN  LQ+LDDGR+TD QG TVDF+NT+IIMTSN+G++++L            R +V++ +R  FRPE LNR+DE+++F  L  ++L++  +LQ++ +  RL +R ++L ++D
Sbjct:  667 QLTETIRRRPYAVILFDEIEKAHPDVFNIFLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQYILDIAGDNSRYDEMRHRVMEAMRNSFRPEFLNRIDEVIIFHSLDKKELRQIVQLQVERLKARLDDRKISLRLSD 804          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            LTEAVRR+PYSVVL DEVEKAH  VFN LLQVL+DGRLTD  GRTVDFRNTVI+MTSNLG+   +  ++G    +  R  V+  V  HFRPE +NR+DE+VVF+PL  EQ+     +Q+  +  RL ER ++L+++
Sbjct:  662 LTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQ-IQELVG--DREAQRAAVMDAVGAHFRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLERELSLSLS 794          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRRRPY+V+LFDEVEKAH  VFN +LQ+LDDGR+TDGQGRTVDF NTV+I+TSN+G++ +L         +    +V   +  HFRPE LNRLDE ++F  L  E+L++   LQ+  +  RL +R + L ++D
Sbjct:  667 QLTEAVRRRPYAVILFDEVEKAHQDVFNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSILDLGGDDSQYREMERRVHDALHAHFRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISD 804          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 74/148 (50.00%), Postives = 108/148 (72.97%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ-----------VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            QLTE+VRRRPY+VVLFDE+EK H  VFN LLQ+L+DGRLTD +GRTVDF+NT++I+TSN+G++ +  G  G +   ++ DQ           V +E++++FRPE LNRLDEI+VF  L+ +++ E   + +K+V  R++E+G+ L VT
Sbjct:  602 QLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKVIEKG-GGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVT 748          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_TROWT (Chaperone protein clpB OS=Tropheryma whipplei (strain Twist) GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE+VRRRPYSVVLFDE EKAH  VF+ LLQVLD+GRLTD  GRTVDFRNT+I++TSN+G+ +L    +   T   A + V  EVR+ FRPE LNRLDEIV+F+PLS   + +   L ++ +  R+ +R + + V++
Sbjct:  509 QLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRYLSDISLEATT---AHEYVNDEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSE 643          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_TROW8 (Chaperone protein clpB OS=Tropheryma whipplei (strain TW08/27) GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE+VRRRPYSVVLFDE EKAH  VF+ LLQVLD+GRLTD  GRTVDFRNT+I++TSN+G+ +L    +   T   A + V  EVR+ FRPE LNRLDEIV+F+PLS   + +   L ++ +  R+ +R + + V++
Sbjct:  503 QLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRYLSDISLEATT---AHEYVNDEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSE 637          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 75/137 (54.74%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSVVLFDEVEKAH  VFNTLLQVLD+GRLTDGQGRTVDFR+TVIIMTSNLG++  +  ++ + + +  +  V++ V  HFRPE +NR+DE +VF  L+   +    ++Q++ +  RL  R + L+V +
Sbjct:  667 LTEAVRRKPYSVVLFDEVEKAHSDVFNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTSNLGSD--MIQLLAEKSYEEMKSAVMEIVMAHFRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEE 801          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPC_STAES1.944e-3552.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ1.944e-3552.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PSEAE1.944e-3555.80Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB2_ANASP1.944e-3549.28Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_PSEPK5.655e-3556.62Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_PROMM5.655e-3552.90Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPC_GUITH7.386e-3550.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_TROWT7.386e-3554.35Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPB_TROW87.386e-3554.35Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPB_DICNO7.386e-3554.74Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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